Detailed information on CNT30221243


BLAST search results

BLAST vs Swiss-Prot:
sp|P80264|NDUS2_SOLTU, E-value = 2e-18

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675027Hordeum vulgareSetaria viridis36.9885.6194.98797forward
CNT30201968Hordeum vulgarePisum sativum9.5625.7892.23206forward
CNT30164425Hordeum vulgarePistacia vera20.724.0384.75446reverse complement
CNT30194250Hordeum vulgareSecale cereale59.1647.6698.591275forward
CNT30307642Hordeum vulgareTriticum aestivum22.5155.9497.73485forward
CNT30681493Hordeum vulgareTriticum urartu27.2935.1597.79588forward
CNT30596463Hordeum vulgareOryza meridionalis19.03101.2395.61410forward
CNT30371226Hordeum vulgareOryza glumipatula13.2310092.63285forward
CNT3038524Hordeum vulgareCucumis melo25.3857.8883.73547reverse complement
CNT30104396Hordeum vulgareOryza rufipogon33.1866.5797.48715forward
CNT30578338Hordeum vulgareOryza barthii13.2378.391.93285forward

Expression of CNT30221243

Nothing found.

Peptides detected in this lncRNA

>peptide 1 (60 aa)
MTRLPLALPPSGLPFLPMLPRRRPTTLRACGVFARRSLRVVPSSPQAVCMGGLSLAATFC*

>peptide 2 (55 aa)
MQSASALNYSIPDRRIMAPRKHSIQQQHLLQPREEKLMLATFERSPHRSDLEHYL*

>peptide 3 (77 aa)
MSRGELCNSPPAKVIAAVASVWKRVSFRQHLFQIGKDEYLCWVLQTRIASDQNLINVPGVDHIFWAISIQEFERLCS*

>peptide 4 (46 aa)
MALLCIGRTKPIANNKLFPAPSTLINSPILPSLSCQPIVSKLTAAN*

>peptide 5 (33 aa)
MITPGYALAPLTGTPGPAYARENPGRSSDQMCG*

>peptide 6 (30 aa)
MSSRMLRSGIRSEILDLPVPSRHGKEIRNK*

>peptide 7 (32 aa)
MSRSDLPFPSNDPASPGSSTVRAPFPPYAPPT*

Sequence

>CNT30221243
CCATTTGAGGTGGCCCAGCCCAGCATTCATTCACAAATCCTGTAGTGAAATTGAGACTGCTCGACCTCGGAAGCTAATTCGCGTGTAGGCAGCGCTGTCT
TAATACCGTTGACTGTATCTATTCATTGATACATTGGCTCGCTCCCCCCCTCTTTTTTCAAGAATGAATGAGCCGCTCGGACCTTCCATTTCCGTCAAAT
GACCCGGCTTCCCCTGGCTCTTCCACCGTCCGGGCTCCCTTTCCTCCCTATGCTCCCCCGACGTAGGCCCACCACGCTTCGCGCCTGCGGCGTTTTCGCG
AGACGGTCTTTGCGAGTAGTGCCATCCTCCCCGCAGGCTGTCTGTATGGGTGGGTTGTCCCTTGCTGCTACGTTCTGTTAGGCGCTATGAATTACAGGAA
ATTCAGTGGTTGACTTGGACAGCAGGCGGGTTACACGTTCCACTGTGCGGAGATGTGAGGTGCAGGTGGTGATGATCACCCCGGGGTATGCGCTAGCGCC
CTTGACGGGCACTCCAGGACCCGCCTACGCTCGTGAAAACCCAGGTCGGTCCTCCGACCAGATGTGTGGATAACGAGGCCACCTTCACAACCTTCTCCCT
TCTATCTTTATCCAAAGTCAGGTAGGGCGGTTCGCTTGAGTTGCTCAACCGTCCCTTTGCCCGGTGCTCATGACGCGCTACGGAACCTCCACCGTGCTAG
CGGCATAGGAGCCTACTCAGCGTCAGTGGCTTCGTGCCGCACTGGAGTGATCCAATATGTGGTTCCGCATGTTCCACCACTTCTCCGTTCATTTCCAATA
CTGATCGTGAAACACCATGAGCAGCAGGATGTTGAGGTCCGGAATTCGAAGTGAAATTCTTGATTTGCCCGTTCCTAGTCGTCATGGGAAAGAAATAAGA
AATAAATAAGAAAGAGATTATTCCCCTAGAGCTTGTCCAGTACCACCAGTACTCAAACTGCATCTCCGCGCGTCTACCTGGCGCTTTTATTAGCCGCCTT
GCATGCAAGCGAAGCGCTATTGGTGGCAATTAATAGCTCACTGAGCGATGATTGATGCAGTCAGCCAGTGCCCTCAATTATTCTATTCCTGATAGAAGGA
TCATGGCGCCCCGAAAGCATTCCATCCAGCAGCAGCATCTCCTTCAACCACGCGAGGAAAAATTGATGTTAGCTACATTCGAGCGTTCACCACACAGAAG
CGATCTCGAACACTACCTATGATAATAAATCCAAAGGAAAGGTCGACAAAATGATTCAATCTGACTTTATCGGTATTCTGGATTGAGTAAAAAAGGGATA
TATGAAGTTCAAGGCCTTGCCAAAACTGTCATGGCCCTATTATGTATAGGCCGTACTAAGCCAATAGCGAATAACAAACTCTTTCCTGCTCCCTCGACCT
TAATTAACTCCCCCATCCTGCCAAGCCTCAGCTGCCAGCCCATTGTATCTAAGCTCACTGCGGCAAATTGATACAAGTAGCTAAAGATCTCGCATCCGAC
ATCTCCAGCCGAACGGTTAGGCAACACTAGGGTGCCTGGGTCAAAATTCCGCTTACCAAACAAGATGTCGAGAGGCGAACTCTGTAATTCCCCTCCTGCA
AAAGTGATAGCGGCTGTAGCATCCGTGTGGAAGAGGGTAAGCTTTCGGCAACACCTTTTTCAGATTGGAAAGGATGAATACTTGTGTTGGGTCCTGCAGA
CCAGGATAGCCTCAGATCAAAACCTAATAAATGTACCTGGGGTTGATCATATTTTTTGGGCAATAAGTATTCAGGAATTTGAGCGCTTATGTAGCTAAAA
ACTCTGCCACCTGAATACTTGATTCATTAAGGTCGTCACCCTATACCCGGAAGTCTCTATCGTTTTCTTTGTCTGTTAAGATTCACAGGGTTGGGACTCC
CTAAATCAAACTGCAATCGTTGTTTATCAACCACTCACGACGACACCGAGATCTTCGACTTAGCTCCCACAGGTCATCCACCCGGGGCGGAAGATAACGA
AAGGGAGACAAAGTCCTAACTAAATCAACACACAATAACCTCAACCTTCTACCCATTCCATCCATCATATCAGCCGAGTCGAGGAGATTAGTTCTTATCT
ATAGATAAGGCAAGAGAGAACTTATGACCTCGCGGATGGAGAGGGATTCGAACCC