Detailed information on CNT30557835


BLAST search results

BLAST vs Swiss-Prot:
sp|Q5EFU4|CRD1_HORVU, E-value = 7e-107

BLAST vs NONCODE:
NONGMAT001508, E-value = 9e-21

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30375469Panicum halliiArabidopsis thaliana23.1418.3381.82143forward
CNT30293788Panicum halliiTriticum aestivum30.174.493.01186forward
CNT30222759Panicum halliiHordeum vulgare17.4821.6495.37108forward
CNT3014813Panicum halliiZea mays37.548097.41232forward
CNT30342208Panicum halliiEragrostis tef29.4556.8893.96182forward
CNT30149182Panicum halliiBrachypodium distachyon28.6451.1692.09177forward
CNT30115498Panicum halliiOryza nivara22.3319.6393.48138forward
CNT30550454Panicum halliiOryza brachyantha22.3312.5794.2138forward
CNT30115390Panicum halliiEutrema salsugineum24.9228.6283.77154forward

Expression of CNT30557835

Peptides detected in this lncRNA

>peptide 1 (56 aa)
MNLGLKKVYFLALRRNPENSAVQERSRNSTNIWRSGPSILSAAALNSGLRTKWVWL*

Sequence

>CNT30557835
ACCGAGAGGCAGAAGAACCGTGACCAGAGCTTGGCCTTCCAGTCGTTAAGGAACTGCGGCTGAGCCTTTAGCAGGGCAGAGAAGAAGTCACCGTGCCTGT
TCTCATCCTGGCACCAGTTCTCGAAGTACTTGAAGATGGGGTAAACCTGGTACTCCGGGTTCGCCTTGAGGTGCCTGAAGATGGTGGCGTAGAAGATGAA
CTTGGGCTTGAAGAAGGTGTACTTCCTAGCCTTGAGGAGGAACCCGGAGAACTCCGCGGTGCAGGAGCGCTCGAGGAACTCGACGAATATCTGGCGGAGC
GGTCCGTCCATCTTGTCCGCGGCGGCCTTGAACTCCGGGTTGCGCACGAAGTGGGTCTGGTTGTAGTCCGTCTTGAACTCCTGCAGCAGCGCGTCGAACT
CCGCCTGGTTGAGCTGCTTGTTGATCTCGGCGTTGAAGAGGCGTTCCATCTCGTCGAAGTCGGTGGTGTAGAACCGCGGCGTGAGCAGCGTCTCCTGGAT
CTCCGTCTTGCCCCGCTTCTTGGGGCCCGAGGACTTGGGCGGCGCGGCGGCCGCGGCGGAGGCCGACACGCGGAAGCGGACCACGGAGCGACGGGCCAGG
GGCAGGCCGGCGGAGGGC