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Detailed information on CNT30574872


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30522654Oryza barthiiSetaria italica35.1158.6194.31211forward
CNT30640917Oryza barthiiNymphaea colorata27.4519.4884.24165forward
CNT30524694Oryza barthiiPhaseolus vulgaris12.8127.487.0177forward
CNT30293788Oryza barthiiTriticum aestivum23.4656.495.74141forward
CNT3014813Oryza barthiiZea mays23.1347.9392.81139forward
CNT30363833Oryza barthiiSorghum bicolor47.5932.3994.76286forward
CNT30620290Oryza barthiiCajanus cajan14.6429.4384.0988forward
CNT30595630Oryza barthiiOryza meridionalis19.4752.2399.15117forward
CNT30149182Oryza barthiiBrachypodium distachyon21.9638.1593.94132forward
CNT3099936Oryza barthiiOryza rufipogon83.5310099.8502forward
CNT30497686Oryza barthiiDigitaria exilis29.7850.2895.53179forward
CNT30557967Oryza barthiiPanicum hallii47.5957.0994.41286forward
CNT30115390Oryza barthiiEutrema salsugineum21.6324.1686.15130forward

Expression of CNT30574872

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MGNPENSAVQERSRNSTKICRRGPSILSAAALNSGLRTKWVWL*

>peptide 2 (31 aa)
TERQKNRDQSLAFQSLRNCGCALSSAEKKSP*

>peptide 3 (38 aa)
MRLEDTTRGLAAESPRIAAGLRRESSMAEEAISSNTWPG

Sequence

>CNT30574872
TACCGAGAGGCAGAAGAACCGTGACCAGAGCTTGGCCTTCCAGTCGTTGAGGAACTGCGGCTGCGCCTTGAGCAGCGCGGAGAAGAAATCACCGTGACGG
TTCTCATCCTGGCACCAGTTCTCAAAGTACTTGAAGATGGGGAACCCGGAGAACTCCGCGGTGCAGGAGCGCTCGAGGAACTCGACGAAGATCTGCCGGA
GAGGCCCCTCCATCTTGTCGGCGGCGGCCTTGAACTCCGGGTTGCGGACGAAGTGGGTCTGGTTATAGTCCGTCTTGAACTCCTGCAGCAGCGCGTCGAA
CTCCTCCTGGTTGAGCTGCTTGTTGATCTCGGCGTTGAACAGCCGCTCCATCTCGTCGAAGTCCGTGGTGTAGAACCGCGGCGTCAGCAGCGTCTCCTGG
ATCTCCGTCTTCCCGCGCTTCTTGGGCGTCCCGGGCTTCGCCGCGGGCGGCGCCGCGGCTGACGACGCCACGCGGAACCGCACGATGCGCCTGGAAGACA
CGACGCGGGGCTTGGCGGCGGAGAGCCCGCGCATTGCCGCCGGGTTGAGGAGGGAGAGCTCCATGGCGGAGGAGGCCATTTCGTCGAACACCTGGCCGGG
G