Detailed information on CNT3099936


BLAST search results

BLAST vs Swiss-Prot:
sp|Q5EFU4|CRD1_HORVU, E-value = 3e-64

BLAST vs NONCODE:
NONGMAT001508, E-value = 5e-25

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30522654Oryza rufipogonSetaria italica42.0358.6193.84211forward
CNT30640917Oryza rufipogonNymphaea colorata32.8719.4883.64165forward
CNT30524694Oryza rufipogonPhaseolus vulgaris33.8660.580.59170forward
CNT30293788Oryza rufipogonTriticum aestivum27.895695.71140forward
CNT3014813Oryza rufipogonZea mays27.6947.9392.81139forward
CNT30363833Oryza rufipogonSorghum bicolor56.9732.3994.41286forward
CNT30620290Oryza rufipogonCajanus cajan27.8946.8281.43140forward
CNT30595630Oryza rufipogonOryza meridionalis23.3152.2399.15117forward
CNT30149182Oryza rufipogonBrachypodium distachyon26.2938.1593.94132forward
CNT30574872Oryza rufipogonOryza barthii10083.5399.8502forward
CNT30497686Oryza rufipogonDigitaria exilis35.6650.2895.53179forward
CNT30557967Oryza rufipogonPanicum hallii56.9757.0994.06286forward
CNT30115390Oryza rufipogonEutrema salsugineum25.924.1686.15130forward

Expression of CNT3099936

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MGNPENSAVQERSRNSTKICLRGPSILSAAALNSGLRTKWVWL*

>peptide 2 (30 aa)
ERQKNRDQSLAFQSLRNCGCALSSAEKKSP*

Sequence

>CNT3099936
CCGAGAGGCAGAAGAACCGTGACCAGAGCTTGGCCTTCCAGTCGTTGAGGAACTGCGGCTGCGCCTTGAGCAGCGCGGAGAAGAAATCACCGTGACGGTT
CTCATCCTGGCACCAGTTCTCAAAGTACTTGAAGATGGGGAACCCGGAGAACTCCGCGGTGCAGGAGCGCTCGAGGAACTCGACGAAGATCTGCCTGAGA
GGCCCCTCCATCTTGTCGGCGGCGGCCTTGAACTCCGGGTTGCGGACGAAGTGGGTCTGGTTATAGTCCGTCTTGAACTCCTGCAGCAGCGCGTCGAACT
CCTCCTGGTTGAGCTGCTTGTTGATCTCGGCGTTGAACAGCCGCTCCATCTCGTCGAAGTCCGTGGTGTAGAACCGCGGCGTCAGCAGCGTCTCCTGGAT
CTCCGTCTTCCCGCGCTTCTTGGGCGTCCCGGGCTTCGCCGCGGGCGGCGCCGCGGCTGACGACGCCACGCGGAACCGCACGATGCGCCTGGAAGACACG
AC