CANTATAdb - search

Detailed information on CNT30553799

BLAST search results

BLAST vs Swiss-Prot:
sp|A2Y609|CALM2_ORYSI, E-value = 7e-39

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30693832	Oryza glaberrima	Oryza sativa	80.94	21.89	99.78	450	forward
CNT30596276	Oryza glaberrima	Oryza meridionalis	100	99.82	95.86	556	forward
CNT30104901	Oryza glaberrima	Oryza longistaminata	82.55	28.35	98.69	459	forward
CNT30101764	Oryza glaberrima	Oryza rufipogon	79.86	82.53	98.2	444	forward

Expression of CNT30553799

Peptides detected in this lncRNA

>peptide 1 (63 aa)
KAATIQFSTQQGSKDDDRKEPGNAYLHNDPRKMMKPQQILCSGRRKISITIKRNQASDVVSHD*

>peptide 2 (32 aa)
RLQPFNSARNREVKMMIERNQAMHICTTIQEK*

Sequence

>CNT30553799
AAGGCTGCAACCATTCAATTCAGCACGCAACAGGGAAGTAAAGATGATGATAGAAAGGAACCAGGCAATGCATATCTGCACAACGATCCAAGAAAAATGA
TGAAACCCCAACAAATCCTATGCTCCGGCAGGCGCAAGATAAGCATCACAATCAAAAGAAACCAGGCATCTGATGTTGTTTCGCATGACTAGACCACCTA
ACCCGATCCCTACTCAACATTACCACCAGCAAAGATAGGTACTTAAAAGGAACATCACAAAGTACAGCTTTGTTGTAGGCCCTGACAGTTTTAGTTCACT
TCAGACAGAACTTATTTAATGGGAACCCTCCTCACTTGGCCATCATGACCTTAACGAACTCCTCGTAGTTGATCTGGCCATCGCCATCGACGTCAGCCTC
CTTGAGCTCCTCCTCAGAGTCGGTATCCTTCATCTTCTTCGCCATCAGGTTCAGGAACTCTGGGAAGTCAATGGTCCCATTGCCATCAGCATCAACCTCG
TTGATCATGTCCTGCAGCTCCGCCTCAGTTGGGTTCTGACCAAGGGACCGCATCAC