Detailed information on CNT30673126


BLAST search results

BLAST vs Swiss-Prot:
sp|Q7DMP0|CALM2_SOLTU, E-value = 2e-49

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693832Setaria viridisOryza sativa44.399.4490.72194forward
CNT30373447Setaria viridisArabidopsis thaliana43.2531.0384.66189forward
CNT30617482Setaria viridisSesamum indicum45.3112.3185.86198forward
CNT30147448Setaria viridisMedicago truncatula43.2537.1384.13189forward
CNT30625935Setaria viridisDaucus carota33.6410.3482.99147forward
CNT30596276Setaria viridisOryza meridionalis39.8231.2490.8174forward
CNT30104901Setaria viridisOryza longistaminata44.3911.9891.24194forward

Expression of CNT30673126

Peptides detected in this lncRNA

>peptide 1 (49 aa)
MVPLPSASTSLIMSCSSASVGFWPRERITVPSSLVVMQPARGKRNQTYD*

>peptide 2 (38 aa)
SKGHDKLQLVILITVQFGQTYFMGTAPHLAIMTLTNSS*

Sequence

>CNT30673126
ACTCAAAGGGACATGACAAACTACAGCTTGTGATCCTGATAACAGTTCAATTTGGACAGACTTATTTCATGGGGACCGCTCCTCACTTGGCCATCATGAC
CTTGACGAACTCCTCGTAGTTGATCTGGCCGTCGCCATCCACGTCAGCCTCGCGGATCATCTCATCGACTTCCTCATCGGTCAGCTTCTCACCAAGACGC
GGAAGGCCTCCTTGAGCTCCTCCTCGGAATCAGTGTCCTTCATCTTCCTTGCCATCAGGTTTAGGAACTCCGGGAAGTCGATGGTCCCGTTGCCATCAGC
ATCAACCTCGTTGATCATGTCCTGCAGCTCTGCTTCAGTAGGGTTCTGGCCAAGGGAGCGCATCACAGTTCCCAGCTCCTTGGTAGTGATGCAACCTGCC
AGGGGAAAAAGAAACCAAACTTATGATTAGTACTCAA