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Detailed information on CNT3051546


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30700558Amborella trichopodaQuercus lobata45.2380.7481.19218forward
CNT30500730Amborella trichopodaCoffea canephora60.7933.9183.28293forward
CNT30616511Amborella trichopodaSesamum indicum58.343.0380.43281forward
CNT30727660Amborella trichopodaCorchorus capsularis47.7242.0582.17230forward
CNT30524932Amborella trichopodaPhaseolus vulgaris45.8547.1282.81221forward
CNT30628928Amborella trichopodaVigna unguiculata46.4744.8981.7224forward
CNT30591858Amborella trichopodaMusa acuminata55.8153.0684.39269forward
CNT3088002Amborella trichopodaVigna radiata43.984081.13212forward
CNT30145737Amborella trichopodaMedicago truncatula5039.1280.91241forward
CNT30312432Amborella trichopodaCamelina sativa5061.9582.16241forward
CNT3079663Amborella trichopodaBrassica juncea37.1433.6583.24179forward
CNT30263629Amborella trichopodaBrassica rapa30.912683.22149forward
CNT3017147Amborella trichopodaZea mays46.8931.6181.86226forward
CNT30205386Amborella trichopodaHelianthus annuus65.7744.3480.44317forward
CNT30625502Amborella trichopodaDaucus carota32.1619.0481.94155forward
CNT30620207Amborella trichopodaCajanus cajan28.426.3883.94137forward
CNT30354661Amborella trichopodaLactuca sativa48.3441.9181.12233forward
CNT30573841Amborella trichopodaVitis vinifera79.4680.883.03383forward
CNT30642025Amborella trichopodaCannabis sativa45.2342.582.57218forward
CNT3027877Amborella trichopodaTheobroma cacao70.7586.3380.94341forward
CNT30121164Amborella trichopodaCitrus clementina70.1251.5283.14338forward
CNT30114394Amborella trichopodaFicus carica33.427.0682.61161forward

Expression of CNT3051546

Peptides detected in this lncRNA

>peptide 1 (62 aa)
MWGYTLEMWGYSQEMWDYILEMMDCSLVMKGYILVMMMVRMPYHPHKERIGHQLLVRIACLD*

>peptide 2 (53 aa)
RRHSWTAWRINKRGTILRRRGIVTRRSWAIASGGRTIAWRCRAITRRSGAISR*

>peptide 3 (41 aa)
KETFLDCLENKQERDYTSPKGDCNSEKLGYSFGRSDYSLAM*

Sequence

>CNT3051546
GAAGGAGACATTCTTGGACTGCTTGGAGAATAAACAAGAGAGGGACTATACTTCGCCGAAGGGGGATTGTAACTCGGAGAAGTTGGGCTATAGCTTCGGG
AGGTCGGACTATAGCTTGGCGATGTAGGGCTATAACCAGGAGAAGTGGGGCTATAAGCAGGTGAAGTGGGACTGTATGAAGGTGAGGTTGGGCTATAGGA
AGGTGAGGTTGGGCTATAGGAAGGTGATGTAGGGCTATAGGAAGGTGAAGTTGGGCTATAAGAAGGCGAGGTTGGGCTGTAACCGGGGGATGTGGGGCTA
TACCCTGGAGATGTGGGGCTATAGCCAGGAGATGTGGGACTATATCCTGGAGATGATGGACTGTAGCCTGGTGATGAAGGGCTATATCCTGGTGATGATG
ATGGTGAGAATGCCATACCACCCACATAAGGAGAGAATTGGGCATCAGTTATTGGTGAGGATCGCATGTTTGGACTGAGAAG