Detailed information on CNT3023560


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONGMAT000067, E-value = 1e-22

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30628784Populus trichocarpaVigna unguiculata21.8513.6784.62104forward
CNT30559586Populus trichocarpaActinidia chinensis26.0515.3783.06124forward
CNT3088002Populus trichocarpaVigna radiata21.0118.8782100forward
CNT30574179Populus trichocarpaVitis vinifera15.5522.787.8474forward

Expression of CNT3023560

Peptides detected in this lncRNA

>peptide 1 (52 aa)
MPVMGCILLIGGCNLARLGCSQGRLGYRLVKWGCRMGMWGCKMGMWGCMMGR*

>peptide 2 (64 aa)
MLDCTQVKWDCTQVKWGCNWGMWGCSWGMWGCSSGKWGCSWGKWGCSSGKWGCSLVKWGSMMDL*

Sequence

>CNT3023560
CTATAATTTGGAGATGTTGGACTGTAAGGACTGGCTGGTGACAATCTTGGACTGCTAGGTGAGTATGCCAGTGATGGGCTGTATTTTGCTGATTGGGGGT
TGTAACTTGGCGAGGTTGGGCTGTAGCCAGGGGAGGTTGGGCTATAGGCTGGTGAAGTGGGGCTGTAGGATGGGGATGTGGGGCTGTAAGATGGGGATGT
GGGGCTGTATGATGGGGAGGTAGGGCTGTACGCAGGTGATGTTGGACTGTACGCAGGTGAAGTGGGACTGTACGCAGGTGAAGTGGGGCTGTAACTGGGG
GATGTGGGGCTGTAGCTGGGGGATGTGGGGCTGTAGCTCGGGGAAGTGGGGCTGTAGCTGGGGGAAGTGGGGCTGTAGCTCGGGGAAGTGGGGCTGTAGC
TTGGTGAAGTGGGGGAGTATGATGGACTTGTAGGAGAATAGGCAGGACTAGTTGGGCTATAACTAGGAGAACTGGG