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Detailed information on CNT30256655


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675703Avena sativaSetaria viridis55.989.3284.86251forward
CNT30549101Avena sativaIpomoea triloba41.231.3682.7185forward
CNT30700558Avena sativaQuercus lobata17.5929.2689.8779forward
CNT30616460Avena sativaSesamum indicum57.2417.9180.93257forward
CNT30378927Avena sativaManihot esculenta41.8730.3782.45188forward
CNT30403468Avena sativaBeta vulgaris42.7624.8184.9192forward
CNT30506120Avena sativaNicotiana attenuata58.5744.9681.37263forward
CNT3091337Avena sativaSolanum tuberosum67.2637.0180.79302forward
CNT30193210Avena sativaSecale cereale47.6610090.19214forward
CNT3088002Avena sativaVigna radiata59.2450.1979.32266forward
CNT30234505Avena sativaBrassica oleracea35.638083.75160forward
CNT30508904Avena sativaSolanum lycopersicum62.5845.4781.14281forward
CNT30554580Avena sativaOryza glaberrima90.6559.8586.49407forward
CNT30443444Avena sativaAegilops tauschii98.4447.4888.01442forward
CNT30311681Avena sativaCamelina sativa62.5839.1479281forward
CNT30141877Avena sativaLolium perenne90.4290.6292.36406forward
CNT30216750Avena sativaKalanchoe fedtschenkoi48.5544.4982.57218forward
CNT30205386Avena sativaHelianthus annuus67.2642.2482.78302forward
CNT30713436Avena sativaMalus domestica golden36.5350.9381.71164forward
CNT30625502Avena sativaDaucus carota55.930.8479.68251forward
CNT30366537Avena sativaSorghum bicolor81.9642.283.7368forward
CNT30620207Avena sativaCajanus cajan39.878.3383.24179forward
CNT30596736Avena sativaOryza meridionalis94.6556.2986.82425forward
CNT30354603Avena sativaLactuca sativa43.8829.184.77197forward
CNT30705868Avena sativaPrunus avium45.8819.482.52206forward
CNT3027877Avena sativaTheobroma cacao25.1728.6188.5113forward
CNT30109704Avena sativaOryza longistaminata49.2239.7587.33221forward
CNT30577473Avena sativaOryza barthii75.2862.0286.69338forward
CNT30176441Avena sativaVigna angularis61.9245.9580.94278forward
CNT30558075Avena sativaPanicum hallii91.7652.2286.89412forward
CNT30335475Avena sativaCynara cardunculus71.2724.6382.5320forward

Expression of CNT30256655

Peptides detected in this lncRNA

>peptide 1 (57 aa)
CSLEKSDYKGSSSLGCLESKHVKGCIWPKKDCSSVKLDCSSAKLGCSWETSGCSQAT*

>peptide 2 (53 aa)
MTEMWGCMTEMWGCMMATSGYTMATSGCKMVTSGCMQERSGCMQERSGYKLAM*

Sequence

>CNT30256655
CTGTAGTTTGGAGAAGTCTGACTATAAGGGCTCATCATCCTTGGGCTGCTTGGAGAGTAAGCATGTGAAGGGCTGTATTTGGCCGAAGAAGGATTGTAGC
TCGGTGAAGTTGGACTGTAGTTCGGCGAAGTTGGGCTGTAGCTGGGAGACGTCGGGCTGTAGCCAGGCGACGTAGGGCTGTATGCAGGGGATGTTGGGCT
GTATGAGGGAGATGTAGGGCTATATGAGGGAGAGGTAGGGCTGTATGACGGAGATGTGGGGCTGTATGACGGAGATGTGGGGCTGTATGATGGCGACGTC
GGGCTATACGATGGCGACGTCGGGCTGTAAGATGGTGACGTCGGGCTGTATGCAGGAGAGGTCGGGCTGTATGCAGGAGAGGTCGGGCTATAAACTGGCG
ATGTAGGACTGTAGCTCGGTGAAGTGGGACTGTAGCTCGGCGATGTGGG