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Detailed information on CNT30410012


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONSLYT000794, E-value = 4e-28

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30523536Papaver somniferumSetaria italica74.4750.0980.21283forward
CNT30549166Papaver somniferumIpomoea triloba73.1641.3780.94278forward
CNT30500730Papaver somniferumCoffea canephora81.5835.8879.68310forward
CNT30403782Papaver somniferumBeta vulgaris89.7481.5881.82341forward
CNT30628902Papaver somniferumVigna unguiculata51.8444.4781.22197forward
CNT3091361Papaver somniferumSolanum tuberosum80.2641.580.98305forward
CNT30591858Papaver somniferumMusa acuminata96.0571.9980.27365forward
CNT3088002Papaver somniferumVigna radiata56.3240.3881.31214forward
CNT30508941Papaver somniferumSolanum lycopersicum80.2676.8380305forward
CNT30263848Papaver somniferumBrassica rapa97.8987.9480.38372forward
CNT30468525Papaver somniferumSaccharum spontaneum62.8928.3580.33239forward
CNT3016764Papaver somniferumZea mays69.2146.881.37263forward
CNT3067979Papaver somniferumLeersia perrieri4042.2284.87152forward
CNT30205370Papaver somniferumHelianthus annuus88.4251.4580.65336forward
CNT30688491Papaver somniferumTriticum urartu89.4779.4478.82340forward
CNT30341749Papaver somniferumEragrostis tef96.8482.779.35368forward
CNT30596736Papaver somniferumOryza meridionalis81.8441.1979.74311forward
CNT30354818Papaver somniferumLactuca sativa75.7955.0780.9288forward
CNT30370935Papaver somniferumOryza glumipatula81.8432.1379.42311forward
CNT30573841Papaver somniferumVitis vinifera77.8962.4584.46296forward
CNT3027877Papaver somniferumTheobroma cacao94.4790.8980.5359forward
CNT30103220Papaver somniferumOryza rufipogon95.2638.9778.73362forward
CNT30577473Papaver somniferumOryza barthii82.6357.6178.98314forward
CNT30551544Papaver somniferumOryza brachyantha89.4748.9280.29340forward

Expression of CNT30410012

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MITRRCGTVAGRCGTVARRCRTVPRRRRTVCRRGGAV*

>peptide 2 (50 aa)
MWDCSWEMWDCSSEMSDCTQETSDCMQERWGCMMARWGCRTARWGYMMVT*

Sequence

>CNT30410012
CGGTGATATTCTTGGACTGCTTGGAGAGTATGCCAAAGATGGACTGTACTTTGCCGATGAAGGATGATAACTAGGAGATGTGGGACTGTAGCTGGGAGAT
GTGGGACTGTAGCTCGGAGATGTCGGACTGTACCCAGGAGACGTCGGACTGTATGCAGGAGAGGTGGGGCTGTATGATGGCGAGGTGGGGCTGTAGGACG
GCGAGGTGGGGCTATATGATGGTGACGTAGGACTGTATGATGGAGAGGTAGGGCTATAGACTGGAGAGGTAGGGCTGTAAGCGGGGGAAGTGGGGCTGTA
AGCCGGAGAAGTGGGGCTGTAGCTGGGGGAAGTGGGGCTATAGCTTGGGGAAGTGGGGCTGTAACTTGGAGAAGTGGGGC