Detailed information on CNT30710572


BLAST search results

BLAST vs Swiss-Prot:
sp|Q01517|ALFC2_PEA, E-value = 4e-44

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30676912Glycine maxSetaria viridis29.3126.4183.21131forward
CNT30524487Glycine maxSetaria italica29.319.8283.21131forward
CNT30314796Glycine maxCorylus avellana58.6138.1487.4262forward
CNT30273043Glycine maxChenopodium quinoa56.610.1484.58253forward
CNT3019571Glycine maxCitrullus lanatus35.1215.5480.89157forward
CNT30381313Glycine maxManihot esculenta342790.13152forward
CNT30405165Glycine maxBeta vulgaris33.1128.2484.46148forward
CNT30200362Glycine maxPisum sativum58.6193.9188.93262forward
CNT3075914Glycine maxBrassica juncea27.9620.6383.2125forward
CNT30610790Glycine maxGossypium raimondii55.0380.3985.77246forward
CNT30128108Glycine maxCorymbia citriodora38.0332.582.35170forward
CNT30365623Glycine maxSorghum bicolor44.7417.9280200forward
CNT3037127Glycine maxCucumis melo47.8739.783.64214forward
CNT30104230Glycine maxOryza rufipogon35.356.4180.38158forward
CNT30334895Glycine maxCynara cardunculus36.6940.2981.71164forward

Expression of CNT30710572

Peptides detected in this lncRNA

>peptide 1 (32 aa)
SKTIKTLHFRQISLLPLHPPSTPTITAGVAAA*

Sequence

>CNT30710572
TCCAAGACTATAAAAACATTACATTTTAGACAAATTAGTCTTCTTCCACTTCATCCTCCGTCAACACCTACTATAACTGCTGGTGTTGCTGCTGCCTAAC
ATGTATCATATTCACTACATACATCTTAGTAGGAGTAGCCTTTGACGAACAACTCCTTCTTGGCTTCCTCGGATTCACCCTCACCGGGACAGCAGGGGGA
ATTCTCCTGTGAAGGAGCTTGAGGGTGTAATCAGCAACTGTCTGAGGACTGGCCTTGTCCTTGGACTCAGCTCCAGGTGTAACCATGCTAGGCTTAAGAA
GAATACCCTCAAAAAGGACATTGTTCTCAGCAAGGTAGAAGAAAACCTCTGCCCAGACCTTTTTTGCTACTTCAAAAGTTCTGTCAATACCATGCTCCCC
ATCAAGCAAGATCTCTGGTTCCACAATTGGGACCAATCCATTGTCCT