Detailed information on CNT30676392


BLAST search results

BLAST vs Swiss-Prot:
sp|Q40677|ALFP_ORYSJ, E-value = 7e-17

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30538163Setaria viridisBrassica napus20.1115.0189.1974forward
CNT30237267Setaria viridisBrassica oleracea20.119.1289.1974forward
CNT3075914Setaria viridisBrassica juncea20.1112.2187.8474forward
CNT30481517Setaria viridisChara braunii17.9321.8587.8866forward

Expression of CNT30676392

Peptides detected in this lncRNA

>peptide 1 (77 aa)
MDHHGEDVLSLRNQYVSSELLADELVAVVLDEHALLGLGGLAVGGVLQRPRVGEGHVPRVGPLVHGVEELQGVLGDLL

Sequence

>CNT30676392
TAATTTAATTTCTCTTATACATATAGTATAGCATTACCATGCCTCAAGCTTGCATCTCAATGGCGAGCTCGATCTTTGCAGTAGCTAGCAGTAGTAACTA
ACGGCACGCACAAAGCATCGATGAGCACCATGCATGGATCATCACGGCGAAGACGTGCTTAGCTTGCGTAACCAGTATGTATCGTCGGAGTTGCTAGCCG
ATGAATTAGTAGCTGTAGTTCTTGACGAACATGCCCTCCTTGGCCTCGGCGGCCTCGCCGTCGGAGGTGTTCTGCAGCGCCCGCGCGTAGGAGAAGGACA
CGTGCCACGGGTTGGGCCCCTGGTTCATGGCGTTGAGGAGCTTCAGGGTGTACTCGGCGACCTGCTCC