Detailed information on CNT30503674


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30700605Nicotiana attenuataQuercus lobata23.0313.949070reverse complement
CNT30511018Nicotiana attenuataSolanum lycopersicum78.6278.3687.45239forward
CNT30143764Nicotiana attenuataMedicago truncatula21.7121.8586.3666forward
CNT30154558Nicotiana attenuataPrunus persica29.9329.7487.9191forward
CNT3058749Nicotiana attenuataAmborella trichopoda19.4121.6191.5359forward
CNT30318775Nicotiana attenuataAsparagus officinalis22.714.1786.9669reverse complement

Expression of CNT30503674

Peptides detected in this lncRNA

>peptide 1 (76 aa)
MVGLGGLVSGLSCPSTELGHVAQAKAWAAGLLKWGGPREAGFTEQRIAPALCSGRITGWCSPSPTNASWAAPVKPLL

>peptide 2 (61 aa)
PSSVVWACNPNGGINVVECWAAPDGRAWWASFWPVLSKHRVGSRGPSESMGCWAPKVGRTA*

Sequence

>CNT30503674
GCCGAGCTCAGTAGTGTGGGCTTGTAACCCAAATGGGGGCATTAATGTAGTGGAATGTTGGGCTGCTCCAGATGGTAGGGCTTGGTGGGCTAGTTTCTGG
CCTGTCCTGTCCAAGCACAGAGTTGGGTCACGTGGCCCAAGCGAAAGCATGGGCTGCTGGGCTCCTAAAGTGGGGCGGACCGCGTGAGGCTGGTTTCACA
GAGCAACGAATAGCTCCCGCTCTGTGCAGTGGAAGGATTACGGGCTGGTGTTCTCCAAGCCCAACAAATGCCTCATGGGCTGCTCCAGTTAAACCTCTAC
TTTT