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Detailed information on CNT30675792


BLAST search results

BLAST vs Swiss-Prot:
sp|P27521|CA4_ARATH, E-value = 1e-88

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695577Setaria viridisOryza sativa50.3634.5192.88351forward
CNT30523309Setaria viridisSetaria italica50.3629.97100351forward
CNT30708917Setaria viridisGlycine max37.7339.2581.37263forward
CNT30300839Setaria viridisTriticum aestivum50.3632.993.16351forward
CNT30564637Setaria viridisActinidia chinensis28.1217.2184.18196forward
CNT3084615Setaria viridisVigna radiata25.6815.5180.45179forward
CNT30554749Setaria viridisOryza glaberrima46.218.5392.55322forward
CNT30138628Setaria viridisLolium perenne25.5437.7997.19178forward
CNT30626732Setaria viridisDaucus carota21.8112.1484.87152forward
CNT30596737Setaria viridisOryza meridionalis25.9729.7794.48181forward
CNT30370931Setaria viridisOryza glumipatula50.3620.3493.16351forward
CNT30573808Setaria viridisVitis vinifera37.4541.0480.84261forward
CNT30102887Setaria viridisOryza rufipogon42.0434.9691.81293forward
CNT30577292Setaria viridisOryza barthii30.5619.1994.84213forward
CNT30117373Setaria viridisOryza nivara50.3622.4393.16351forward
CNT30604463Setaria viridisOryza punctata50.3629.9292.02351forward

Expression of CNT30675792

Peptides detected in this lncRNA

>peptide 1 (77 aa)
MYVLLSPSAHQIGDHSPSTQPEKVWMMVLCHGSDRCCSRLSKGPLPVTSFSLASSVGAKLSGLKTLPGYPHSWGGRL*

>peptide 2 (60 aa)
IPITPQYSLSSPCIQHYYNTVLNLLSGLNTHHKLMIHTERNSHRSRFNVCPPVPISPPNW*

>peptide 3 (78 aa)
MNSMTNSVDDDAKYSDLPASYHCGALMSPALVSTSGISIPATPSIAHRPFTSSACTNHRRGMERKSTFVLAGRSSQGLY

Sequence

>CNT30675792
ACATACCAATCACCCCTCAGTACTCACTCTCCTCACCATGCATACAGCATTATTACAACACAGTCCTTAATCTCCTCTCCGGATTAAACACACATCACAA
ACTGATGATCCACACAGAAAGGAATTCACATCGATCGCGTTTCAATGTATGTCCTCCTGTCCCCATCAGCCCACCAAATTGGTGATCACTCCCCGTCGAC
TCAACCGGAGAAAGTCTGGATGATGGTGTTGTGCCATGGGTCGGACAGGTGCTGCAGCAGGTTGTCGAAGGGCCCCTTGCCGGTGACCTCCTTCTCCTTG
GCCTCGAGCGTGGGCGCGAAGTTGAGCGGGTTGAAGACGCTGCCGGGGTATCCGCACTCGTGGGGCGGCAGGCTGTAGCTCTTGAAGATGGGGTCCTGGT
TGACGCTGCCGGGGTTCTTGATGTCCTGCCACCGCCGGATCTCGACGTAGTGGAAGAGGATGAACTCGATGACGAACAGCGTGGACGACGACGCGAAGTA
CTCCGACTTGCCGGCGTCGTACCACTGCGGCGCGTTGATGAGCCCGGCCTTGGTCAGCACCTCCGGGATCAGCATCCCGGCCACCCCCAGCATCGCCCAC
CGCCCGTTCACCAGCTCCGCCTGCACGAACCACCGCAGAGGAATGGAGAGGAAGAGCACGTTCGTTTTAGCCGGCAGGAGCAGCCAAGGTTTGTATT