Detailed information on CNT30554749


BLAST search results

BLAST vs Swiss-Prot:
sp|P27521|CA4_ARATH, E-value = 1e-80

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695524Oryza glaberrimaOryza sativa40.9155.1697.89711forward
CNT30675792Oryza glaberrimaSetaria viridis18.5346.292.55322forward
CNT30523309Oryza glaberrimaSetaria italica19.2228.5292.81334forward
CNT30300839Oryza glaberrimaTriticum aestivum18.6430.3791.05324forward
CNT30604528Oryza glaberrimaOryza punctata21.3532.4996.77371forward

Expression of CNT30554749

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MHTPTKKKEETRREHLRSPNHRFHQPELIKLLEMPWP*

>peptide 2 (34 aa)
MHPDPCMQETITTTHTVSLNLITSISLSLLPPIH*

>peptide 3 (34 aa)
MLLRVLVRFVPLASSFSLASRVGSKLRGLKTLPG*

>peptide 4 (30 aa)
MEDCPRKVDLSDADGRRAATGARAVTDAMA*

>peptide 5 (53 aa)
MGGVASYPALSGCRDTGESKGGFLLDGGLSCGWLLLPRRTGEMVGADRSEPRIF

>peptide 6 (84 aa)
MHAGNNYHNTHSKSESHHIHISLSPPPNSLTSYTCILQQKKKKKQEENIFDRPIIGFTSLNSSSSLRCPGPDEIDHTLSLTASG*

>peptide 7 (48 aa)
MMVLCHGSDRCCSRNPKNASIASLPATTTSTKIQNNGVVSLYAALLFL*

>peptide 8 (49 aa)
MRCWVGVANGRRRLLSSVIRMPGYGGIKGRVSIGWRSQLWLVAAATSDG*

Sequence

>CNT30554749
ATGCAGCTCTGGATTAAAAGTGACTGAATCTGTACGGATTTTTTTTTTTTGTCTTTGAATCGATACGCAATACTGAATCAATGCGCAAATGAAGCACTTG
ACAAGCAATTAAGCGTAGTTTATCCACCATAATTAAGATCGAGACCATGAGATAGCTAGAACACTGCTGCTACCATGAGATAGTTTATCCCCCTGTAGTA
CTGTACATCAGAAATTCACCACTCAACTCACCCCCTCACCCATGCATCCAGATCCATGCATGCAGGAAACAATTACCACAACACACACAGTAAGTCTGAA
TCTCATCACATCCATATCTCTCTCTCTCCTCCCCCCAATTCATTAACATCTTATACATGCATACTCCAACAAAAAAAAAAGAAGAAACAAGAAGAGAACA
TCTTCGATCGCCCAATCATCGGTTTCACCAGCCTGAACTCATCAAGCTCCTTGAGATGCCCTGGCCCTGATGAAATCGATCACACGCTCAGCCTGACAGC
GTCTGGATGATGGTGTTGTGCCACGGGTCAGACAGGTGCTGCAGCAGGAACCCCAAGAACGCCAGCATCGCCAGCCTCCCTGCAACAACAACATCAACAA
AAATTCAGAACAATGGCGTCGTTTCATTGTATGCTGCTCTTCTTTTCTTATGATATATTGATGTGCAATGCTTTTACGTGTTTTGGTTAGATTCGTACCG
TTGGCGAGCTCCTTCTCCTTGGCCTCGAGGGTGGGCTCGAAGTTGAGGGGGTTGAAGACGCTGCCGGGGTAGCCGCACTCGTGCGGCGGGAGGCTGTAGC
TCTTGAAGATGGGGTCCTGGTTGACGCAGCCAGGGTTCTTGATGTCCTGCCACCGCCGGATCTCCACGTAGTGGAACAGGATGAACTCGATGACGAACAG
CGTCGACGACGACGCGAAGTAGGTGGCCTTGCCGGCGTCGTACCACTGCGGCGCGTCGATCAACCCGATCTTCGTCAGCACCTCCGGCAGCAGCATCCCG
GCCACCCCCAGCATCGCCCACCGCCCGTTCTCCGGGTCCTCCGCCAGACCCAACGGGTCGAACCCGTTATCGCCTGGCAAGCTGTATACACCCGTTTAAC
TATCATGTTAGTAGTTTCTTATGATGCTCTCTATTGGCAGTAGAAATATATTTTTTTATGTGTGTGCTCACCTGCCGTTGAGGTAGGTGGGAGAAGGGAG
GCCGGGGAGCCACTCTCCCTTGGCCTCCGCCCGAACATTACGCCTCGTAGTCGGTGCGCGGGCGAGACGGATGGAGGATTGCCCTAGGAAGGTAGACTTG
AGCGACGCCGACGGGCGGAGGGCTGCGACCGGGGCGCGGGCGGTGACGGACGCCATGGCTTAGCTTCCCCGGCTTAGAGAGGGGAGGAAGCGAAGCGGGT
GTAGTCACAAGGGTACGTTTTGGCCGGCACGGAGCAAAGGCGTGGCTTGTATTAAACTGTCCGGGAGTGGCCGGCGCTGCCAGGTGGCCACGGCGGCGAG
GGCGGCGACGGACGGCGGAGATCGGCGGTGGGGGTGGATCGGACGGCCAGGATGCGTTGTTGGGTGGGTGTGGCCAATGGGAGGCGTCGCCTCTTATCCA
GCGTTATCCGGATGCCGGGATACGGGGGAATCAAAGGGAGGGTTTCTATTGGATGGAGGTCTCAGCTGTGGCTGGTTGCTGCTGCCACGTCGGACGGGTG
AGATGGTTGGTGCAGATCGCTCGGAGCCTCGGATTTTT