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Detailed information on CNT30102887


BLAST search results

BLAST vs Swiss-Prot:
sp|P27521|CA4_ARATH, E-value = 6e-67

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695577Oryza rufipogonOryza sativa84.7369.8199.72710forward
CNT30675792Oryza rufipogonSetaria viridis34.9642.0491.81293forward
CNT30523309Oryza rufipogonSetaria italica36.426.0592.13305forward
CNT30300839Oryza rufipogonTriticum aestivum29.8323.4393.2250forward
CNT30224179Oryza rufipogonHordeum vulgare13.7227.2592.17115forward
CNT30554731Oryza rufipogonOryza glaberrima62.6536.6498.67525forward
CNT30138628Oryza rufipogonLolium perenne20.6436.7393.64173forward
CNT30684486Oryza rufipogonTriticum urartu13.7253.7494.78115forward
CNT30347972Oryza rufipogonEragrostis tef19.4520.0795.71163forward
CNT30117373Oryza rufipogonOryza nivara101.3154.2597.41849forward
CNT30604528Oryza rufipogonOryza punctata36.5226.897.06306forward

Expression of CNT30102887

Peptides detected in this lncRNA

>peptide 1 (84 aa)
MHAGNNYHNTHSKSESHHIHLSLSPPPNSLTSYTCILHKKKKKKQEENIFHRPIIGFTSLNSSSSLRCPGPDEIDHTLSLTASG*

>peptide 2 (37 aa)
MHTPQKKKKETRREHLPSPNHRFHQPELIKLLEMPWP*

>peptide 3 (48 aa)
MMVLCHGSDRCCSRNPKNASIASLPATTTSTKIQNNGVVSLYAALLFF*

>peptide 4 (35 aa)
MASFHCMLLFFSSDILIESYRWRAPSPWPRGWARS*

>peptide 5 (34 aa)
MHPDSCMQETITTTHTVSLNLITSISLSLLPPIH*

Sequence

>CNT30102887
ATCGAGACCATGAGATAGCTAGAACACTGCTGCTACCATGAGATAGTTTATCCCCCTGTAGTACTGTACATCAGAAATTCACCACTCAACTCACCCCCTC
ACCCATGCATCCAGATTCATGCATGCAGGAAACAATTACCACAACACACACAGTAAGTCTGAATCTCATCACATCCATCTCTCTCTCTCTCCTCCCCCCA
ATTCATTAACATCTTATACATGCATACTCCACAAAAAAAAAAAAAAGAAACAAGAAGAGAACATCTTCCATCGCCCAATCATCGGTTTCACCAGCCTGAA
CTCATCAAGCTCCTTGAGATGCCCTGGCCCTGATGAAATCGATCACACGCTCAGCCTGACAGCGTCTGGATGATGGTGTTGTGCCACGGGTCAGACAGGT
GCTGCAGCAGGAACCCCAAGAACGCCAGCATCGCCAGCCTCCCTGCAACAACAACATCAACAAAAATTCAGAACAATGGCGTCGTTTCATTGTATGCTGC
TCTTCTTTTCTTCTGATATATTGATAGAATCGTACCGTTGGCGAGCTCCTTCTCCTTGGCCTCGAGGGTGGGCTCGAAGTTGAGGGGGTTGAAGACGCTG
CCGGGGTAGCCGCACTCGTGCGGCGGGAGGCTGTAGCTCTTGAAGATGGGGTCCTGGTTGACGCAGCCAGGGTTCTTGATGTCCTGCCACCGCCGGATCT
CCACGTAGTGGAACAGGATGAACTCGATGACGAACAGCGTCGACGACGACGCGAAGTAGGTGGCCTTGCCGGCGTCGTACCACTGCGGCGCGTCGATCAA
CCCGATCTTCGTCAGCACCTCCGGCAGCAGCATCCCGG