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Detailed information on CNT30376158


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONGMAT000067, E-value = 4e-67

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30516792Arabidopsis thalianaJuglans regia82.4482.8180.19737forward
CNT30267761Arabidopsis thalianaChenopodium quinoa54.9260.1781.26491forward
CNT30727661Arabidopsis thalianaCorchorus capsularis62.9889.9481.88563forward
CNT30378908Arabidopsis thalianaManihot esculenta61.8658.5878.66553forward
CNT3087851Arabidopsis thalianaVigna radiata78.0876.3779.51698forward
CNT30554721Arabidopsis thalianaOryza glaberrima38.4836.7980.52344forward
CNT30263540Arabidopsis thalianaBrassica rapa74.05102.6485.95662forward
CNT30140910Arabidopsis thalianaLolium perenne33.5684.0381300forward
CNT30607743Arabidopsis thalianaGossypium raimondii61.381.1980.84548forward
CNT30205370Arabidopsis thalianaHelianthus annuus26.5136.2982.28237forward
CNT30625547Arabidopsis thalianaDaucus carota41.7235.9379.62373forward
CNT30620207Arabidopsis thalianaCajanus cajan28.4111.8283.07254forward
CNT30705868Arabidopsis thalianaPrunus avium8369.8779.78742forward
CNT30642143Arabidopsis thalianaCannabis sativa42.0691.4882.98376forward
CNT30109704Arabidopsis thalianaOryza longistaminata23.8338.3183.57213forward
CNT30121049Arabidopsis thalianaCitrus clementina40.1633.1884.68359forward
CNT30103220Arabidopsis thalianaOryza rufipogon35.9134.5581.62321forward

Expression of CNT30376158

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MLGCKKERLGCMLVKLGCKQVKSGCKQAKSGCNLGK*

>peptide 2 (67 aa)
MMDYILEKKKAKRPFHQHMEKTVHLTLGINAYLDLTGSLETSCLHGKECLTLVNEQESFQIQDHPYS*

Sequence

>CNT30376158
TGTAGTTGGGAGATGTAGGACTGTAGGGGCTAGCTGGTGATAGTCTTGCATTGCTAGGAGAGTAAGCTATAGATGGGCTATATTTAGCAGACTGAGGGTT
GTAGCTTGGAGACGTAGGACCGTAGCTTGGTGATGTTGGACTGTAACTTGGTGAAGTAGGGCTGTAGCCAGGAGATGTGGGGCTATATGCGGGTGAAGTA
GGGCTGTAAGACGGAGATGTTGGGCTGTAAGATGGTGAAGTAGGGCTGTAAGAAGGCGATGTTGGGCTGTAAGAAGGAGAGGTTGGGCTGTATGCTGGTG
AAGTTGGGCTGTAAGCAGGTGAAGTCGGGCTGTAAGCAGGCGAAGTCGGGCTGTAACTTGGGGAAGTAGGACTGTAGCTCGGAGATGTCGGGCTGTAGCT
TGGCGACGTTGGGCTATAGCTTGGAGACGTTGGGCTGTAGCTCGGAGAGGTAGGAGAATAGGAAGGACTTGTAGGAGAATAAGCAGGGCTTGTTGGGCTA
TAGCCAGGAGAACTGGGACTGTAGGTAGGCGAAGTTGGACTGTAACCGGGAGAAGTCGGGCTATATCCAGGCGAAGTTGGACTGTAACCGGGAGAAGTAG
GACTGTATCCAGGCGATGATGGACTATATCCTGGAGAAGAAGAAGGCGAAAAGGCCATTCCACCAACATATGGAGAAAACTGTGCATCTGACATTGGGGA
TAAACGCATATTTGGACTTAACAGGTAGTTTGGAGACATCATGCCTTCATGGTAAGGAGTGCCTGACACTGGTGAACGAGCAGGAGTCATTCCAAATTCA
AGACCATCCATATAGCTAGGGAGCTGAAGTTCAATTGCATTCTTCAGCATCTCATCATTCAGATACAACTCACAATCTCCTGTCCCAATTGGTG