CANTATAdb - search

Detailed information on CNT30355182

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30523536	Lactuca sativa	Setaria italica	38.86	48.14	81.25	272	forward
CNT30700558	Lactuca sativa	Quercus lobata	30.57	79.26	80.37	214	forward
CNT30710529	Lactuca sativa	Glycine max	30.71	38.12	81.86	215	forward
CNT30591949	Lactuca sativa	Musa acuminata	41.57	59.88	80.76	291	forward
CNT30607691	Lactuca sativa	Gossypium raimondii	36.29	37.52	81.1	254	forward
CNT30558075	Lactuca sativa	Panicum hallii	26.43	23.45	83.24	185	forward

Expression of CNT30355182

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MVMLGCRMVMSGCRKERSGCKPERSGCKLAM*

>peptide 2 (32 aa)
MMGCTRGTTGYSPVMKLAKNPSHQHKAKTVHR*

Sequence

>CNT30355182
CTGTAGTTGGGGGATGTAGGGCTGTATGGACTACTAGGAGAATAAGCCAACGAGGGGCTGTACTTAGCGGATGAAGGGTTGTAACTTGGTGAGGTGGGAC
TGTAACTTGGAGAAGTAGGACTGTAGCTTGGGGAAGTAGGACTGTACCCAGGTGAAGTTGGGCTGTAAGCAGGGGAGGTTGGGCTGTAGGAAGGGGAGGT
CGGGCTGTAGGATGGTGATGTTGGGCTGTAGGATGGTGATGTCGGGCTGTAGGAAGGAGAGGTCGGGCTGTAAGCCGGAGAGGTCGGGCTGTAAGCTGGC
GATGTAGGGCTGTAGCTAGGTGATGTGGGTGAGTAGCTTGGTGAGGTAGGGGAGTAGCTAGGTGAAGTGGGTGAGTAGGTAGGACTTGTTGGGCTATAAC
CAGGCGAGGTGGGGCTGTATCCCGGAGATGATGGGCTGTACCCGGGGGACGACGGGCTATAGCCCGGTGATGAAGTTGGCGAAAAACCCATCCCACCAAC
ATAAGGCGAAAACTGTGCATCGTTAATCGGAGACAGCCGTAGATTTGGGCTCAACAGATAATTCGTGGGAGACATTGCACCATCGTGGAAAGGAGTAATG
GGGGACCGCCCAGGTGTCATCCCGATATCCAGCCCGTCCATGTAACTCGGAAGCTGAACATCAATCGCTTGCTGTAACATCTCTTCGTTCAACAACAAAG