Detailed information on CNT3073783


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SY97|LHCA3_ARATH, E-value = 4e-100

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30708457Brassica junceaGlycine max62.7464.7179.58431forward
CNT30543413Brassica junceaBrassica napus88.06100.597.85605forward
CNT30233607Brassica junceaBrassica oleracea98.5486.0299.41677forward
CNT30259451Brassica junceaBrassica rapa10094.2499.27687forward
CNT30583045Brassica junceaEchinochloa crusgalli24.7521.9981.18170forward

Expression of CNT3073783

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MSLQVESHRFGTREEQCLQESDRPFLESQVQ*

>peptide 2 (33 aa)
MASIASLPFLTSLSFNSFIDFSSFPNPRGIVYP*

>peptide 3 (33 aa)
MIISVELEAGQDIVVDGIRQMIKKVLVRPHTGH*

>peptide 4 (35 aa)
YKRRICLHRVLQHKETDGTKRNKQDCRIQENGKPT*

>peptide 5 (39 aa)
LTKDEYVYTGCYNTKKLMVPRETNKIVGYKRMGNQHKTP*

Sequence

>CNT3073783
CTTACAAAAGACGAATATGTTTACACAGGGTGTTACAACACAAAGAAACTGATGGTACCAAGAGAAACAAACAAGATTGTAGGATACAAGAGAATGGGAA
ACCAACATAAAACACCATGAGATGAATACGATATGATCATCTCAGTGGAACTTGAGGCTGGTCAAGACATTGTTGTTGACGGGATCCGCCAAATGATCAA
GAAGGTTCTGGTAAGGCCCCACACCGGTCACTAGTCCCTGCACAAAATAGCCTAGGATGGCGAGCATTGCCAGTCTACCGTTCTTGACCTCCTTGAGTTT
CAACTCCTTCATCGACTTCTCGTCTTTTCCAAACCCAAGAGGTATTGTTTACCCATAGATCCTGGGTTGTACCAGTCCTGCAACCTCCTGTGCTCAGCAA
ACCCCATCAAAGCCATCTCGAGAACAAAGAGTGTGTAAGGGTCTGCCCAGTAGCTGTATGTCCCTGCAGGTGGAATCACACCGGTTTGGAACCAGGGAAG
AGCAGTGTCTGCAGGAATCAGACCGGCCTTTCCTAGAATCTCAGGTGCAATAGCTCCAGCTGCACCCAACATAGCGAACCTCCCGTTGATGATCTCTCCG
TAGGCTAGCCATCTCGGCTCGATGAAGCCTCCAGTACCCTCTGGGTCTGAAAGACCAAGCGGATCGAATCCGAAGTCGCCAGGTAAG