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Detailed information on CNT30441655


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SY97|LHCA3_ARATH, E-value = 5e-66

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30350311Aegilops tauschiiEragrostis tef88.2754.4184.68444forward
CNT30583045Aegilops tauschiiEchinochloa crusgalli79.3251.6286.22399forward
CNT30115627Aegilops tauschiiOryza nivara86.6825.4785.32436forward

Expression of CNT30441655

Peptides detected in this lncRNA

>peptide 1 (74 aa)
WNLRLVRMLLLTGSERWSRRFWKGPTPVKMACRDMPRKASMARRPFLISLSLSSFISFSLLVPNPSGLKMGPPG*

>peptide 2 (50 aa)
MGRPSTGRCPPAGSRLPGTTGSPSPGAPGPPCPGPPGRSCPPPPSSPSGR*

>peptide 3 (34 aa)
MEPGLYQSWSRRCSAKPMSAISNTKSVYGSAQYW*

Sequence

>CNT30441655
GTGGAACTTGAGGCTGGTGAGGATGTTGTTGTTGACGGGGTCTGAGAGGTGGTCGAGGAGGTTCTGGAAGGGCCCGACGCCGGTGAAGATGGCCTGCAGG
GACATGCCGAGGAAGGCGAGCATGGCGAGGCGGCCGTTCTTGATCTCCTTGAGCTTGAGCTCCTTCATCTCCTTCTCGCTCTTGGTCCCGAACCCGAGCG
GGTTGAAGATGGGCCCGCCGGGGTAGGAAGTACTGCTTCCCCATGGAGCCCGGGTTGTACCAGTCCTGGAGCCGCCGGTGCTCCGCGAAGCCGATGAGCG
CCATCTCGAACACGAAGAGCGTGTATGGGTCGGCCCAGTACTGGTAGGTGCCCGCCGGCGGGATCGCGCCTGCCTGGAACCACGGGATCGCCGTCTCCGG
GGGCACCAGGCCCACCTTGCCCAGGGCCTCCGGGGCGATCATGCCCACCACCCCCATCATCGCCGTCCGGCCGTTGAAGATCTCGCCGTAGGCCAGCCAC
CTG