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Detailed information on CNT30579096


BLAST search results

BLAST vs Swiss-Prot:
sp|Q10HD0|CB23_ORYSJ, E-value = 4e-141

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696202Echinochloa crusgalliOryza sativa63.9360.289.57537forward
CNT30522113Echinochloa crusgalliSetaria italica62.9872.5796.6529forward
CNT30187906Echinochloa crusgalliSecale cereale54.1757.0992.09455forward
CNT30298089Echinochloa crusgalliTriticum aestivum39.6448.0592.19333forward
CNT30393936Echinochloa crusgalliTriticum turgidum69.2965.4790.55582forward
CNT30245298Echinochloa crusgalliAvena sativa68.9368.286.36579forward
CNT30665498Echinochloa crusgalliTriticum dicoccoides69.7685.0591.64586forward
CNT30229088Echinochloa crusgalliAnanas comosus70.668.1689.04593forward
CNT30684822Echinochloa crusgalliTriticum urartu69.6471.6990.26585forward
CNT30100939Echinochloa crusgalliOryza rufipogon63.9367.9792.74537forward
CNT30498674Echinochloa crusgalliDigitaria exilis37.546.5395.56315forward
CNT30116688Echinochloa crusgalliOryza nivara53.2153.6692.39447forward
CNT30603927Echinochloa crusgalliOryza punctata53.2156.3793.74447forward

Expression of CNT30579096

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MGPFPVTMACTKKPNMENMARPSGSNAPPG*

>peptide 2 (29 aa)
MAHREWITSSSRLRAKVSGSAESPAVSHP*

Sequence

>CNT30579096
ACCCCTTGAGAAAGAATCAATGTCGATTGATCAAGCCATGGTTCACTCACAAATGTTACACGTACCATTGATTCATCAGCTGACATAAGCATCTGTGCCT
AGTTTACAATTTCACACCACACGTACAGTACAGGCAGCTGCTGATCTGGTCACTGGCCTGGTCAGCACAGAGCATACGCCGGCGCGTGCAAAACTACTAC
ACGCCTACTGCAACAAAGCAGAGTAGAGTACACAGGGGCGACGGAGCTCACTTGCCGGGGACGAAGTTGGTGGCGTAGGCCCATGCGTTGTTGGCGACTG
GGTCCGCGACGTGGTCGAAGAGGTTCTCGATGGGCCCCTTTCCGGTGACGATGGCCTGCACGAAGAAGCCGAACATGGAGAACATGGCGAGGCCCAGCGG
GTCGAACGCGCCGCCGGGGTAGACCTTGTCGAGGCCCTCGCCGAGCGGGCCGCCGCCGACGCGGTAGCCCTCGACGAAGCCCATGAGCACGACCTGGCAG
GCCCAGATGGCGAGGATGCTCTGCGCGTGCACCAGGTTGGGGTTGCCCAGGTAGTCCAGCCCGCCCTCGGAGAAGATCTGCGCGCCGGCCTTGAACCACA
CGGCCTCGCCGAACTTGACGCCGTTCTTGGCCAGGATCTCCGGGAACACGCAGCCCAGCGCGCCCAGCATGGCCCACCGGGAGTGGATCACCTCCAGCTC
ACGGTTGCGGGCGAAGGTCTCCGGGTCGGCGGAGAGCCCCGCCGTGTCCCACCCGTAGTCGCCGGGGAACTCGCCGGTCAGGTACGACGGCGTCTGCTCG
GAGAACGGGCCCAGGTACTTGGGACGGTCAGGGCCGTACC