CANTATAdb - search

Detailed information on CNT30684822

BLAST search results

BLAST vs Swiss-Prot:
sp|Q10HD0|CB23_ORYSJ, E-value = 2e-127

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30297959	Triticum urartu	Triticum aestivum	62.99	100	99.42	514	forward
CNT30393936	Triticum urartu	Triticum turgidum	99.63	91.45	99.75	813	forward
CNT30245298	Triticum urartu	Avena sativa	72.92	70.08	89.58	595	forward
CNT30665498	Triticum urartu	Triticum dicoccoides	84.31	99.85	97.38	688	forward
CNT30229088	Triticum urartu	Ananas comosus	70.83	66.44	86.33	578	forward
CNT30579096	Triticum urartu	Echinochloa crusgalli	71.69	69.64	90.26	585	forward
CNT30603927	Triticum urartu	Oryza punctata	54.78	56.37	89.71	447	forward

Expression of CNT30684822

Peptides detected in this lncRNA

>peptide 1 (46 aa)
MPFLDRISGNTHPRAPSIAHREWITSSSLFLANVSGSADNPAVSHP*

>peptide 2 (71 aa)
MTHDSSIHSLVHTLCLINLHCAQLARGPLARSIMVQINTQSTCSYTLIHDVQVHMHISSDGRTDGRTAKHI*

Sequence

>CNT30684822
TGATCTTGAGTAATGACACACGATTCTTCCATCCATTCCCTCGTGCACACCTTGTGCTTAATTAATTTACATTGCGCGCAGCTAGCGAGAGGACCTCTCG
CTCGCTCGATCATGGTACAAATAAACACACAAAGTACGTGCAGCTACACGTTGATCCACGACGTACAAGTACACATGCATATCTCGTCCGATGGACGGAC
GGACGGACGGACGGCTAAACACATTTAGCTTCCGGGGGCGAAGTTGGTGGCGAAGGCCCAGGCGTTGTTGTTGACCGGGTCGGCGACGTGGTCGAAGAGG
TTCTCAACTGGCCCCTTCCCGGTGACGATGGCCTGCACGAAGAAACCGAACATGGAGAACATGGCGAGGCCAAGTGGGTCGAAGGCGCCGCCCGGGTAGA
TGATGTCGAGGCCCTCGCCGAGGGGCCCGCCACCAACACGGTAGCCCTCGATGAAGCCCATGAGCACCACCTGCACCGCCCAGATGGCGAGGATGCTCTG
CGCGTGCACCAGGTTGGGGTTGCCCAGGTAGTCGAGGCCGCCCTCGGAGAAGATCTGGGCGCCGGCCTTGAACCACACGGCCTCGCCGAACTTGATGCCG
TTCTTGGACAGGATCTCCGGGAACACGCACCCGAGGGCGCCGAGCATCGCCCACCGCGAGTGGATCACCTCCAGCTCCCTGTTCTTGGCGAACGTCTCGG
GGTCAGCAGACAATCCGGCGGTGTCCCATCCGTAGTCGCCGGGGAACTCGCCGGTCAGGTACGACGGGGTCTGCTCGGAGAACGGGCCCAGGTACTTGGG
ACGGTCAGGGCCGTAC