Detailed information on CNT30498674


BLAST search results

BLAST vs Swiss-Prot:
sp|Q10HD0|CB23_ORYSJ, E-value = 1e-92

BLAST vs NONCODE:
NONBNAT005173, E-value = 1e-38

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30522251Digitaria exilisSetaria italica45.9441.894.86311forward
CNT30187133Digitaria exilisSecale cereale45.9444.5691.32311forward
CNT30393441Digitaria exilisTriticum turgidum54.6547.1990.81370forward
CNT30556099Digitaria exilisOryza glaberrima46.5332.3191.75315forward
CNT30665030Digitaria exilisTriticum dicoccoides46.5340.5490.16315forward
CNT30877Digitaria exilisZea mays45.9436.5592.28311forward
CNT30229088Digitaria exilisAnanas comosus46.5336.2188.57315forward
CNT30684492Digitaria exilisTriticum urartu54.6534.7487.57370forward
CNT30369818Digitaria exilisOryza glumipatula54.6553.0191.35370forward
CNT30575846Digitaria exilisOryza barthii43.4333.2691.5294forward
CNT30579096Digitaria exilisEchinochloa crusgalli46.5337.595.56315forward

Expression of CNT30498674

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MAHREWITSSSRLRANVSGSAESPAVSHP*

>peptide 2 (58 aa)
MKKVHMVDSSVGTYTHSLHHFTSRHHVVHSRHLADLTSRKHRAIRRRVQLLHAYCTTS*

Sequence

>CNT30498674
GAAAGAATTAACCAACATGGCCACATCGATGGACAGGCGATGATTCACTCATGAAGAAGGTACACATGGTTGATTCATCAGTTGGCACGTACACTCATAG
TTTACATCATTTTACATCACGTCATCACGTAGTACACAGCAGGCATCTTGCTGATCTGACTAGCAGAAAGCACAGAGCAATACGCCGGCGCGTGCAACTA
CTACACGCCTACTGCACAACAAGCTGACACGATCACTTGCCGGGGACGAAGTTGGTGGCATAGGCCCAGGCATTGTTGGCGACGGGGTCAGCAACGTGGC
GGCCATTCTTGAGCTCCTTCACCTTGAGCTCAGCGGCGGTGTCGGGGTCATCGGCGAGGATGCTCTGCGCGTGCACCAGGTTCGGGTTGCCCAGGTAGTC
GAGCCCGCCCTCGGAGAAGATCTGAGCTCCGGCCTTGAACCACACGGCCTCTCCGAACTTGACGCCGTTCTTGGCGAGGATCTCCGGGAAGACGCAGCCC
AGGGCGCCCAGCATGGCCCACCGCGAGTGGATCACCTCCAGCTCACGGTTGCGCGCGAACGTCTCCGGGTCGGCGGAGAGCCCCGCCGTGTCCCACCCGT
AGTCGCCGGGGAACTCGCCGGTGAGGTACGACGGCGTCTGCTCCGAGAATGGGCCCAGGTACTTGGGTCTGTCTGGG