CANTATAdb - search

Detailed information on CNT30116688

BLAST search results

BLAST vs Swiss-Prot:
sp|Q10HD0|CB23_ORYSJ, E-value = 1e-130

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30522592	Oryza nivara	Setaria italica	57.14	64.85	91.6	476	forward
CNT30187906	Oryza nivara	Secale cereale	64.83	67.75	88.7	540	forward
CNT30245298	Oryza nivara	Avena sativa	54.74	53.71	85.09	456	forward
CNT30579096	Oryza nivara	Echinochloa crusgalli	53.66	53.21	92.39	447	forward
CNT30603927	Oryza nivara	Oryza punctata	67.23	70.62	94.11	560	forward

Expression of CNT30116688

Peptides detected in this lncRNA

>peptide 1 (60 aa)
MPRRCWRRGRRRGRRGSRWGPCRCQGRRRGRAGRRRRLGTPCRGPRRAGRRRRGSPRRIP*

>peptide 2 (66 aa)
MHCCNCNCRLVAYAQALLATGSATWSKRFSMGPLPVSGSSARPSGSKAPPGYTLSRPSPSGPPPTR*

>peptide 3 (49 aa)
RTDLLGRRTNWHRFSWLRCRSYNNDTSLIRSSLGCGLRLTLNLDPKKQR*

Sequence

>CNT30116688
CCCGCACCGATTTATTGGGTCGACGCACAAATTGGCATCGTTTTAGCTGGCTTCGTTGTAGATCCTATAATAACGATACATCATTAATTCGATCATCCCT
TGGATGCGGCCTGCGGCTTACATTAAATCTCGATCCAAAGAAGCAAAGATGATGACAGACAGAAATTAATTAAGCTAGAAATCTCCTCGATCGATCACAC
ACACACACACACAATTAAGGTACATACATACATGCACTGCTGCAACTGCAACTGCAGGTTGGTGGCGTATGCCCAGGCGTTGTTGGCGACGGGGTCGGCG
ACGTGGTCGAAGAGGTTCTCGATGGGGCCCTTGCCGGTGTCAGGGTCGTCGGCGAGGCCGAGCGGGTCGAAGGCGCCGCCTGGGTACACCTTGTCGAGGC
CCTCGCCGAGCGGGCCGCCGCCGACGCGGTAGCCCTCGACGAATCCCATGAGCACCACCTGGACCGCCCAGATGGCGAGGATGCTCTGCGCGTGCACCAG
GTTGGGGTTCCCCAGGTAGTCGAGCCCCCCCTCGGAGAAGATCTGCGCGCCGGCCTTGAACCACACCGCCTCCCCGAACTTCACCCCGTTCTTGGACAGG
ATCTCCGGGAAGACGCAGCCCAGCGCCCCCAGCATTGCCCACCGCGAGTGGATCACCTCCAGCTCCCTGTTCCTCGCGAACGTCTCCGGGTCGGCCGATA
GCCCCGCCGTGTCCCACCCGTAGTCTCCCGGGAACTCTCCGGTCAGGTACGATGGCGTCTGCTCCGAGAACGGGCCCAGGTACTTGGGACGGTCAGGTCC
ATACCTGCACATATATATACTTGTATGTTAGCA