Detailed information on CNT30696202


BLAST search results

BLAST vs Swiss-Prot:
sp|P12330|CB21_ORYSJ, E-value = 6e-141

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30522113Oryza sativaSetaria italica59.372.5789.04529forward
CNT30394912Oryza sativaTriticum turgidum58.7458.9488.17524forward
CNT30554884Oryza sativaOryza glaberrima70.1887.4399.84626forward
CNT30251851Oryza sativaAvena sativa55.6150.8788.51496forward
CNT30229088Oryza sativaAnanas comosus60.3161.8486.25538forward
CNT30103268Oryza sativaOryza rufipogon74.8958.6100668forward
CNT30579096Oryza sativaEchinochloa crusgalli60.263.9389.57537forward
CNT30117587Oryza sativaOryza nivara74.8964.5499.85668forward

Expression of CNT30696202

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MVIRASPKSAEEVDGAARAITGEESAMVAAAIDAVSCES*

>peptide 2 (37 aa)
CTQHQLDHHLVALNPSSPTQRQRTRWPQIHPTTINHC*

>peptide 3 (31 aa)
MRYPSTAPMSTTCTAQMARMLCAWIRLGLPR*

>peptide 4 (33 aa)
YTTPTRSSSRRTKPIFPNPKTTNSLATNPSNHN*

Sequence

>CNT30696202
TGTACACAACACCAACTCGATCATCATCTCGTCGCACTAAACCCATCTTCCCCAACCCAAAGACAACGAACTCGCTGGCCACAAATCCATCCAACCACAA
TTAACCACTGCTAAGCTACGGTCCCCCACTTCACTTGCCGGGGACGAAGTTGGTGGCGTACGCCCAGGCGTTGTTGTTGACGGGGTCGGCGAGGTGGTCG
GCGAGGTTCTCGAGGGGGCCCTTGCCGGTGACGATGGCCTGGACGAAGAAGCCGAACATGGAGAACATGGCGAGGCCGAGCGGGTCGAAGGCGCCGCCGG
GGTAGAGCGGGTCGACGACCTCGCCGAGCGGCCCGCCGGCGATGCGGTACCCCTCGACGGCGCCCATGAGCACCACCTGCACCGCCCAGATGGCGAGGAT
GCTCTGCGCGTGGATCAGGCTCGGGTTGCCGAGGTAGTCGAGCCCGCCCTCGCTGAAGATCTGCGAGCCCGCCTTGAACCACACGGCCTCGCCGAACTTG
ACGCCGTTCCGGGCGAGGAGCTCCGGGAAGACGCAGCCGAGCGCGCCCAGCATCGCCCACCGGGAGTGGATCACCTCCAGCTCCCGGTTCTTGGCGAACG
TCTCCGGGTCGGCGGAGAGCCCCGCGGTGTCCCACCCGTAGTCGCCCGGGAACTCGCCGGTGAGGTAGAGGACGCGGTCGGCGCCGTACCACGGGCTCCC
CGACGACGCCGCCGGCTTGGGCTTCGCGGCGGTCTTGCGCATGGTGATCCGCGCCTCGCCGAAGAGCGCGGAGGAGGTCGACGGCGCCGCGCGGGCCATC
ACCGGGGAGGAGAGCGCCATGGTGGCCGCGGCCATTGATGCAGTGAGCTGTGAGAGCTGAGAGAGATGGCGATGAGCGAGCGAGTGTGAGTT