CANTATAdb - search

Detailed information on CNT30187906

BLAST search results

BLAST vs Swiss-Prot:
sp|Q10HD0|CB23_ORYSJ, E-value = 9e-115

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30522592	Secale cereale	Setaria italica	60.48	65.67	92.53	482	forward
CNT30393936	Secale cereale	Triticum turgidum	56.59	50.73	96.23	451	forward
CNT30556099	Secale cereale	Oryza glaberrima	53.95	44.1	90.93	430	forward
CNT30245298	Secale cereale	Avena sativa	57.09	53.59	88.57	455	forward
CNT30665498	Secale cereale	Triticum dicoccoides	57.09	66.04	98.02	455	forward
CNT30229088	Secale cereale	Ananas comosus	57.09	52.3	87.03	455	forward
CNT30684632	Secale cereale	Triticum urartu	89.21	82.77	92.41	711	forward
CNT30100939	Secale cereale	Oryza rufipogon	49.81	50.25	90.68	397	forward
CNT30575846	Secale cereale	Oryza barthii	49.81	44.91	90.43	397	forward
CNT30579096	Secale cereale	Echinochloa crusgalli	57.09	54.17	92.09	455	forward
CNT30116688	Secale cereale	Oryza nivara	67.75	64.83	88.7	540	forward
CNT30603927	Secale cereale	Oryza punctata	69.51	69.86	88.81	554	forward

Expression of CNT30187906

Peptides detected in this lncRNA

>peptide 1 (46 aa)
MPFLDRISGNTHPRAPSIAHREWITSSSRFLAKVSGSADSPAVSHP*

>peptide 2 (39 aa)
MVQINTQSTCSYTLIHDVQVHMHISSDGRTDGWLNSKHI*

Sequence

>CNT30187906
GCCAGTTGATGATCTTGAGTAATGTACTAAATGACACACGATTCTTCCATCCATTTGCTCGTGCACCTCGTGCTTAATTAATTTACATTGCGCACAGCCA
GCGAGAGGACCTCTCGCTCGCTCGATCATGGTACAAATAAACACACAAAGTACGTGCAGCTACACGTTGATCCACGACGTACAAGTACACATGCATATCT
CGTCCGATGGACGGACGGACGGATGGCTAAACAGTAAACACATTTAGCTTCCGGGGGCGAAGTTGGTGGCGAAGGCCCAGGCGTTGTTGTTGACTGGGTC
GGCGACGTGGTCGAAGAGCTCGGCGGCGGTGTCGGGGTCGTCGGCGAGGCCAAGCGGGTCGAAGGCGCCGCCCGGGTAGATGATGTCGAGGCCCTCACCG
AGGGGGCCGCCGCCAACGCGGTAGCCCTCGATGAAGCCCATGAGCACCACCTGAACCGCCCAGATGGCCAGGATGCTCTGCGCGTGCACCAGGTTGGGGT
TGCCCAGGTAGTCGAGGCCGCCCTCGGAGAAGATCTGGGCGCCGGCCTTGAACCACACTGCCTCGCCGAACTTGATGCCGTTCTTGGACAGGATCTCCGG
GAACACGCACCCCAGGGCGCCGAGCATCGCCCACCGCGAGTGGATCACCTCCAGCTCCCGGTTCTTGGCGAAGGTCTCTGGGTCGGCCGACAGCCCCGCG
GTGTCCCACCCGTAGTCGCCGGGGAACTCGCCGGTCAGGTACGACGGGGTCTGCTCGGAGAACGGGCCCAGGTACTTGGGACGGTCAGGGCCGTACC