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Detailed information on CNT30603927

BLAST search results

BLAST vs Swiss-Prot:
sp|Q10HD0|CB23_ORYSJ, E-value = 2e-134

BLAST vs NONCODE:
NONSTUT002515, E-value = 3e-21

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30522592	Oryza punctata	Setaria italica	62.8	67.85	92.57	498	forward
CNT30187906	Oryza punctata	Secale cereale	69.86	69.51	88.81	554	forward
CNT30393936	Oryza punctata	Triticum turgidum	56.37	50.28	89.93	447	forward
CNT30589923	Oryza punctata	Musa acuminata	37.83	66.08	92.67	300	forward
CNT30556099	Oryza punctata	Oryza glaberrima	55.23	44.92	96.58	438	forward
CNT30245298	Oryza punctata	Avena sativa	57.88	54.06	85.19	459	forward
CNT30665498	Oryza punctata	Triticum dicoccoides	56.37	64.88	89.93	447	forward
CNT30799	Oryza punctata	Zea mays	44.64	42.65	92.37	354	forward
CNT30229088	Oryza punctata	Ananas comosus	47.54	43.33	92.31	377	forward
CNT30684822	Oryza punctata	Triticum urartu	56.37	54.78	89.71	447	forward
CNT30100939	Oryza punctata	Oryza rufipogon	50.06	50.25	96.47	397	forward
CNT30575846	Oryza punctata	Oryza barthii	50.44	45.25	96.25	400	forward
CNT30579096	Oryza punctata	Echinochloa crusgalli	56.37	53.21	93.74	447	forward
CNT30116688	Oryza punctata	Oryza nivara	70.62	67.23	94.11	560	forward

Expression of CNT30603927

Peptides detected in this lncRNA

>peptide 1 (99 aa)
GVHALRLLDYITSRSKETKMMTEIKLESPRSITHTQLRYIHARLQLQLQGRCVATTSVHMLGWHHLVALALTCRGRSWWRRPRRCWRRGRRRGRRAPSP*

Sequence

>CNT30603927
GGTGTGCACGCCCTGCGGCTGCTTGATTACATTACATCTCGATCCAAAGAAACAAAGATGATGACAGAAATTAAGCTAGAATCTCCTCGATCGATCACAC
ACACACAATTAAGGTACATACATGCACGTCTGCAACTGCAACTGCAGGGTCGGTGCGTGGCTACTACAAGTGTACACATGCTTGGTTGGCATCATCTCGT
GGCGCTAGCTCTCACTTGCCGGGGACGAAGTTGGTGGCGTAGGCCCAGGCGTTGTTGGCGACGGGGTCGGCGACGTGGTCGAAGAGCTCCTTCACCTTGA
GCTCGGCGAAGGTGTCAGGGTCGTCGGCGAGGCCGAGCGGGTCGAAGGCGCCGCCGGGGTACACCTTGTCGAGGCCCTCGCCGAGCGGGCCTCCGCCGAC
GCGGTAGCCCTCGACGAAGCCCATGAGCACCACCTGGCACGCCCAGATGGCGAGGATGCTCTGCGCGTGCACCAGGTTGGGGTTACCCAGGTAGTCGAGG
CCTCCCTCGGAGAAGATCTGCGCGCCGGCCTTGAACCACACCGCCTCGCCGAACTTGACCCCGTTCTTTGACAGGATCTCCGGGAAGACGCAGCCCAGCG
CCCCCAGCATCGCCCACCGCGAGTGGATCACCTCCAGCTCCCTGTTCCGAGCGAACGTCTCCGGGTCGGCCGATAGCCCCGCCGTGTCCCACCCGTAGTC
GCCCGGGAACTCTCCGGTCAGGTACGACGGCGTCTGCTCCGAGAACGGGCCCAGGTACTTGGGACGGTCAGGTCCATACCTACACATATGCAT