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Detailed information on CNT30522113

BLAST search results

BLAST vs Swiss-Prot:
sp|Q10HD0|CB23_ORYSJ, E-value = 1e-123

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30696202	Setaria italica	Oryza sativa	72.57	59.3	89.04	529	forward
CNT30394912	Setaria italica	Triticum turgidum	71.6	58.72	91.19	522	forward
CNT30552254	Setaria italica	Oryza glaberrima	72.57	53.06	87.9	529	forward
CNT30245298	Setaria italica	Avena sativa	70.51	60.54	86.19	514	forward
CNT30665498	Setaria italica	Triticum dicoccoides	71.6	75.76	90.42	522	forward
CNT3010541	Setaria italica	Zea mays	72.43	66	87.69	528	forward
CNT30229088	Setaria italica	Ananas comosus	72.02	60.34	88.38	525	forward
CNT30685853	Setaria italica	Triticum urartu	71.6	53.54	88.89	522	forward
CNT30100939	Setaria italica	Oryza rufipogon	72.02	66.46	92.57	525	forward
CNT30574623	Setaria italica	Oryza barthii	72.57	52.58	88.09	529	forward
CNT30579096	Setaria italica	Echinochloa crusgalli	72.57	62.98	96.6	529	forward
CNT30117587	Setaria italica	Oryza nivara	72.57	51.11	89.04	529	forward

Expression of CNT30522113

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MAHREWITSSSRLRAKVSGSAESPAVSHP*

>peptide 2 (30 aa)
MGPLPVTMACTKNPNMENMARPSGSKAPPG*

Sequence

>CNT30522113
CACGAATGGTACACCGTTGCATTGATTCATCATCAGCTGACATACGCATCTGTGCTTAGTTTACAATAATTTTACATCGTCGGGCACGTCCAGGCAGCTG
CTAGCTGGTCTGGTCTGGTCTGATCTGAAGAGCTCACGAGCACAAAGCAATACGCTGGCGCGTGCAACTACTACACGCCTACTCACGAGCAGAGGGCACA
TCACTTGCCGGGGACGAAGTTGGTGGCGTACGCCCATGCGTTGTTGGCGACGGGGTCGGCGACGTGGTCGAAGAGGTTCTCGATGGGTCCCTTGCCGGTG
ACGATGGCCTGCACGAAGAACCCGAACATGGAGAACATGGCGAGGCCCAGCGGGTCGAAGGCGCCGCCGGGGTAGACCTTGTCGAGTCCCTCCCCGAGCG
GGCCGCCGCCGACGCGGTAGCCCTCGACGAAGCCCATGAGCACGACCTGGCAGGCCCAGATGGCCAGGATGCTCTGCGCGTGCACCAGGTTGGGGTTGCC
CAGGTAGTCCAGCCCGCCCTCGGAGAAGATCTGCGCGCCGGCCTTGAACCACACCGCCTCGCCGAACTTGACGCCGTTCTTGGCAAGGATCTCCGGGAAC
ACGCACCCCAGCGCGCCGAGCATGGCCCACCGCGAGTGGATCACCTCCAGCTCGCGGTTGCGCGCGAAGGTCTCCGGGTCGGCGGAGAGCCCCGCGGTGT
CCCACCCGTAGTCGCCGGGGAACTCGCCG