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Detailed information on CNT30665498


BLAST search results

BLAST vs Swiss-Prot:
sp|Q10HD0|CB23_ORYSJ, E-value = 4e-128

BLAST vs NONCODE:
NONATHT001041, E-value = 1e-26

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30522113Triticum dicoccoidesSetaria italica75.7671.690.42522forward
CNT30187906Triticum dicoccoidesSecale cereale66.0457.0998.02455forward
CNT30297959Triticum dicoccoidesTriticum aestivum58.9378.9997.04406forward
CNT30393936Triticum dicoccoidesTriticum turgidum99.4277.0597.66685forward
CNT30245298Triticum dicoccoidesAvena sativa96.2378.0988.24663forward
CNT30799Triticum dicoccoidesZea mays52.5443.6191.16362forward
CNT30229088Triticum dicoccoidesAnanas comosus84.0366.5586.87579forward
CNT30684822Triticum dicoccoidesTriticum urartu99.8584.3197.38688forward
CNT30100939Triticum dicoccoidesOryza rufipogon76.6366.8489.58528forward
CNT30579096Triticum dicoccoidesEchinochloa crusgalli85.0569.7691.64586forward
CNT30603927Triticum dicoccoidesOryza punctata64.8856.3789.93447forward

Expression of CNT30665498

Peptides detected in this lncRNA

>peptide 1 (46 aa)
MPFLDRISGNTHPRAPSIAHREWITSSSRFLAKVSGSADNPAVSHP*

>peptide 2 (32 aa)
QSTCSYTLIHDVQVHMHISSDGRTDGRMAKHI*

>peptide 3 (29 aa)
TKYVQLHVDPRRTSTHAYLVRWTDGRTDG*

Sequence

>CNT30665498
ACAAAGTACGTGCAGCTACACGTTGATCCACGACGTACAAGTACACATGCATATCTCGTCCGATGGACGGACGGACGGACGGATGGCTAAACACATTTAG
CTTCCGGGGGCGAAGTTGGTGGCGAAGGCCCACGCGTTGTTGTTGACTGGGTCGGCGACGTGGTCGAAGAGGTTCTCAACGGGTCCCTTTCCGGTGACGA
TGGCCTGCACGAAGAAGCCGAACATGGAGAACATGGCGAGGCCAAGTGGGTCGAAGGCGCCGCCCGGGTAGATGATGTCGAGGCCCTCGCCGAGGGGGCC
GCCACCAACGCGGTAGCCCTCGATGAAGCCCATGAGCACCACCTGAACCGCCCAGATGGCCAGGATGCTCTGCGCGTGCACCAGGTTGGGGTTGCCCAGG
TAGTCGAGGCCGCCCTCGGAGAAGATCTGGGCGCCGGCCTTGAACCACACGGCCTCGCCGAACTTGATGCCGTTCTTGGACAGGATCTCCGGGAACACGC
ACCCCAGGGCGCCGAGCATCGCCCACCGTGAGTGGATCACCTCCAGCTCCCGGTTCTTGGCGAAGGTCTCTGGGTCAGCCGACAATCCGGCGGTGTCCCA
CCCGTAGTCGCCGGGGAACTCGCCGGTCAGGTACGACGGGGTCTGCTCGGAGAACGGGCCCAGGTACTTGGGACGGTCAGGGCCGTACC