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Detailed information on CNT30298089


BLAST search results

BLAST vs Swiss-Prot:
sp|Q10HD0|CB23_ORYSJ, E-value = 7e-79

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30188135Triticum aestivumSecale cereale62.4852.0497.23433forward
CNT30245298Triticum aestivumAvena sativa48.0539.2289.19333forward
CNT30665030Triticum aestivumTriticum dicoccoides48.0542.86100333forward
CNT30142786Triticum aestivumLolium perenne68.1144.3690.25472forward
CNT30877Triticum aestivumZea mays48.0539.1390.09333forward
CNT30229088Triticum aestivumAnanas comosus48.0538.2888.59333forward
CNT30685647Triticum aestivumTriticum urartu48.0544.8899.7333forward
CNT30369866Triticum aestivumOryza glumipatula65.6661.990.55455forward
CNT30579096Triticum aestivumEchinochloa crusgalli48.0539.6492.19333forward
CNT30498680Triticum aestivumDigitaria exilis57.8654.9388.78401forward
CNT30116841Triticum aestivumOryza nivara64.0760.2490.32444forward
CNT30603824Triticum aestivumOryza punctata65.6673.9891.21455forward

Expression of CNT30298089

Peptides detected in this lncRNA

>peptide 1 (46 aa)
MPFLDRISGNTHPRAPSIAHREWITSSSLFLANVSGSADNPAVSHP*

>peptide 2 (71 aa)
MTHDSSIHSLVHTLCLINLHCAQLARGPLARSIMVQINTQSTCSYTLIHDVQVHMHISSDGRTDGRTAKHI*

Sequence

>CNT30298089
TGATCTTGAGTAATGACACACGATTCTTCCATCCATTCCCTCGTGCACACCTTGTGCTTAATTAATTTACATTGCGCGCAGCTAGCGAGAGGACCTCTCG
CTCGCTCGATCATGGTACAAATAAACACACAAAGTACGTGCAGCTACACGTTGATCCACGACGTACAAGTACACATGCATATCTCGTCCGATGGACGGAC
GGACGGACGGACGGCTAAACACATTTAGCTTCCGGGGGCGAAGTTGGTGGCGAAGGCCCAGGCGTTGTTGTTGACCGGGTCGGCGACGTGGTCGAAGAGG
TTCTCAACTGGCCCCTTCCCGGTGACGATGGCCTGCACGAAGAAGCCGAACATGGAGAACATGGCGAGGATGCTCTGCGCGTGCACCAGGTTGGGGTTGC
CCAGGTAGTCGAGGCCGCCCTCGGAGAAGATCTGGGCGCCGGCCTTGAACCACACGGCCTCGCCGAACTTGATGCCGTTCTTGGACAGGATCTCCGGGAA
CACGCACCCGAGGGCGCCGAGCATCGCCCACCGCGAGTGGATCACCTCCAGCTCCCTGTTCTTGGCGAACGTCTCGGGGTCAGCAGACAATCCGGCGGTG
TCCCACCCGTAGTCGCCGGGGAACTCGCCGGTCAGGTACGACGGGGTCTGCTCGGAGAACGGGCCCAGGTACTTGGGACGGTCAGGGCCGTAC