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Detailed information on CNT30100939

BLAST search results

BLAST vs Swiss-Prot:
sp|Q10HD0|CB23_ORYSJ, E-value = 3e-126

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30522113	Oryza rufipogon	Setaria italica	66.46	72.02	92.57	525	forward
CNT30187906	Oryza rufipogon	Secale cereale	50.25	49.81	90.68	397	forward
CNT30297959	Oryza rufipogon	Triticum aestivum	38.35	58.95	90.76	303	forward
CNT30394912	Oryza rufipogon	Triticum turgidum	74.05	65.8	89.23	585	forward
CNT30589923	Oryza rufipogon	Musa acuminata	37.97	66.08	92	300	forward
CNT30245298	Oryza rufipogon	Avena sativa	64.68	60.19	85.91	511	forward
CNT30665498	Oryza rufipogon	Triticum dicoccoides	66.84	76.63	89.58	528	forward
CNT30229088	Oryza rufipogon	Ananas comosus	67.72	61.49	89.91	535	forward
CNT30685853	Oryza rufipogon	Triticum urartu	66.84	54.15	89.2	528	forward
CNT30369948	Oryza rufipogon	Oryza glumipatula	42.78	33.83	100	338	forward
CNT30579096	Oryza rufipogon	Echinochloa crusgalli	67.97	63.93	92.74	537	forward
CNT30498680	Oryza rufipogon	Digitaria exilis	34.43	37.26	91.54	272	forward
CNT30116676	Oryza rufipogon	Oryza nivara	61.77	46.21	97.13	488	forward
CNT30603927	Oryza rufipogon	Oryza punctata	50.25	50.06	96.47	397	forward

Expression of CNT30100939

Peptides detected in this lncRNA

>peptide 1 (65 aa)
MHCCNCNCRVGAWLLQVYTWYVGWHHLDRVVVLTCRGRSWWRMPRRCWRRGRRRGRRGSRWGPCR*

>peptide 2 (86 aa)
MVRWLAPSRSCRCAHLPGTKLVAYAQALLATGSATWSKRFSMGPLPVTMAWTKKPNMENMARPSGSKAPPGYTLSRPSPSGPPPTR*

Sequence

>CNT30100939
AAATTAATTAAGCTAGAAATCTCCTCGATCGATCACACACACACACACAATTAAGGTACATACATACATGCACTGCTGCAACTGCAACTGCAGGGTCGGT
GCGTGGCTACTACAAGTGTACACATGGTACGTTGGTTGGCACCATCTCGATCGTGTCGTTGTGCTCACTTGCCGGGGACGAAGTTGGTGGCGTATGCCCA
GGCGTTGTTGGCGACGGGGTCGGCGACGTGGTCGAAGAGGTTCTCGATGGGGCCCTTGCCGGTGACGATGGCCTGGACGAAGAAGCCGAACATGGAGAAC
ATGGCGAGGCCGAGCGGGTCGAAGGCGCCGCCTGGGTACACCTTGTCGAGGCCCTCGCCGAGCGGGCCGCCGCCGACGCGGTAGCCCTCGACGAATCCCA
TGAGCACCACCTGGACCGCCCAGATGGCGAGGATGCTCTGCGCGTGCACCAGGTTGGGGTTCCCCAGGTAGTCGAGCCCCCCCTCGGAGAAGATCTGCGC
GCCGGCCTTGAACCACACCGCCTCCCCGAACTTCACCCCGTTCTTGGACAGGATCTCCGGGAAGACGCAGCCCAGCGCCCCCAGCATCGCCCACCGCGAG
TGGATCACCTCCAGCTCCCTGTTCCTCGCGAACGTCTCCGGGTCGGCCGATAGCCCCGCCGTGTCCCACCCGTAGTCTCCCGGGAACTCTCCGGTCAGGG
GCGGTGCCGAGGAAGCTGGTGGTCTGGTGCAGCGCCGACGCGGCCATCGTTCTAACGAGGGCGATGCGGCGGCGGTTGGGTTGGTTTTTT