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Detailed information on CNT30393936


BLAST search results

BLAST vs Swiss-Prot:
sp|Q10HD0|CB23_ORYSJ, E-value = 6e-126

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30187906Triticum turgidumSecale cereale50.7356.5996.23451forward
CNT30297959Triticum turgidumTriticum aestivum57.8210099.61514forward
CNT30245298Triticum turgidumAvena sativa66.5969.7389.53592forward
CNT30665498Triticum turgidumTriticum dicoccoides77.0599.4297.66685forward
CNT30229088Triticum turgidumAnanas comosus64.6866.0986.43575forward
CNT30684822Triticum turgidumTriticum urartu91.4599.6399.75813forward
CNT30722048Triticum turgidumTriticum spelta39.683.4190.91352forward
CNT30579096Triticum turgidumEchinochloa crusgalli65.4769.2990.55582forward
CNT30603927Triticum turgidumOryza punctata50.2856.3789.93447forward

Expression of CNT30393936

Peptides detected in this lncRNA

>peptide 1 (46 aa)
MPFLDRISGNTHPRAPSIAHREWITSSSLFLANVSGSADNPAVSHP*

>peptide 2 (71 aa)
MTHDSSIHSLVHTLCLINLHCAQLARGPLARSIMVQINTQSTCSYTLIHDVQVHMHISSDGRTDGRTAKHI*

Sequence

>CNT30393936
GCCCGTTGGATCTCCGTATGCCGTTGCGAATGTCCCGTTTCATGAGCTTGAAGTACCATATACGCCATGCAGTTGATGATCTTGAGTAATGACACACGAT
TCTTCCATCCATTCCCTCGTGCACACCTTGTGCTTAATTAATTTACATTGCGCGCAGCTAGCGAGAGGACCTCTCGCTCGCTCGATCATGGTACAAATAA
ACACACAAAGTACGTGCAGCTACACGTTGATCCACGACGTACAAGTACACATGCATATCTCGTCCGATGGACGGACGGACGGACGGACGGCTAAACACAT
TTAGCTTCCGGGGGCGAAGTTGGTGGCGAAGGCCCAGGCGTTGTTGTTGACCGGGTCGGCGACGTGGTCGAAGAGGTTCTCAACTGGCCCCTTCCCGGTG
ACGATGGCCTGCACGAAGAAGCCGAACATGGAGAACATGGCGAGGCCAAGTGGGTCGAAGGCGCCGCCCGGGTAGATGATGTCGAGGCCCTCGCCGAGGG
GCCCGCCACCAACACGGTAGCCCTCGATGAAGCCCATGAGCACCACCTGCACCGCCCAGATGGCGAGGATGCTCTGCGCGTGCACCAGGTTGGGGTTGCC
CAGGTAGTCGAGGCCGCCCTCGGAGAAGATCTGGGCGCCGGCCTTGAACCACACGGCCTCGCCGAACTTGATGCCGTTCTTGGACAGGATCTCCGGGAAC
ACGCACCCGAGGGCGCCGAGCATCGCCCACCGCGAGTGGATCACCTCCAGCTCCCTGTTCTTGGCGAACGTCTCGGGGTCAGCAGACAATCCGGCGGTGT
CCCACCCGTAGTCGCCGGGGAACTCGCCGGTCAGGTACGACGGGGTCTGCTCGGAGAACGGGCCCAGGTACTTGGGACGGTCAGGGCCG