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Detailed information on CNT30245298

BLAST search results

BLAST vs Swiss-Prot:
sp|Q10HD0|CB23_ORYSJ, E-value = 2e-127

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30522113	Avena sativa	Setaria italica	60.54	70.51	86.19	514	forward
CNT30187906	Avena sativa	Secale cereale	53.59	57.09	88.57	455	forward
CNT30298089	Avena sativa	Triticum aestivum	39.22	48.05	89.19	333	forward
CNT30393936	Avena sativa	Triticum turgidum	77.62	74.13	88.16	659	forward
CNT30556099	Avena sativa	Oryza glaberrima	50.41	43.9	85.51	428	forward
CNT30665498	Avena sativa	Triticum dicoccoides	78.09	96.23	88.24	663	forward
CNT30142786	Avena sativa	Lolium perenne	40.52	32.33	91.86	344	forward
CNT30229088	Avena sativa	Ananas comosus	63.84	62.3	83.58	542	forward
CNT30684822	Avena sativa	Triticum urartu	77.97	81.13	88.22	662	forward
CNT30100939	Avena sativa	Oryza rufipogon	60.19	64.68	85.91	511	forward
CNT30575846	Avena sativa	Oryza barthii	46.88	45.02	84.92	398	forward
CNT30579096	Avena sativa	Echinochloa crusgalli	68.2	68.93	86.36	579	forward
CNT30116688	Avena sativa	Oryza nivara	53.71	54.74	85.09	456	forward
CNT30603927	Avena sativa	Oryza punctata	54.06	57.88	85.19	459	forward

Expression of CNT30245298

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MLIDPSTTYKYTCISHPVVGRLANSFNFQGRSW*

>peptide 2 (46 aa)
MPFLDKISGNTHPSAPSIAHLEWMTSSSLFLANVSGSADNPAVSHP*

Sequence

>CNT30245298
ATCCCGATGCAATCCACAGACATTGATGATATATTTAAAAATAATAGATCCGTAACAACGTAAGGGTACTCTGCTAATATAGTTTAACAATCTTCAAGAC
TCTTATAGCGATTGGTATAGCACCACGCCAAAGATCCCTGGTGAATAGATAAAGTACATCCAGTTACTACATGTTGATCGATCCGTCCACGACGTACAAG
TACACATGCATATCCCATCCGGTGGTCGGACGGTTGGCTAACTCATTTAACTTCCAGGGGCGAAGTTGGTAGCGAAAGCCCATGCGTTGTTATTCACAGG
GTCGGCAACGTGGTCGAAGAGGTTCTCGATAGGTCCCTTGCCGGTGACGATGGCCTGCACGAAGAAACCGAACATGGAGAACATGGCGAGGCCAAGTGGG
TCAAAGGCGCCGCCCGGGTAGATCTGGTCGAGGCCCTCGCCGAGCGGGCCGCCACCAACACGGTAGCCCTCGATGAAGCCCATGAGCACGACTTGGGTCG
CCCAGATGGCGAGAATGCTTTGTGCGTGCACAAGGTTGGGGTTGCCTAGATAGTCGAGACCGCCCTCGGAAAAGATCTGAGCGCCAGCCTTGAACCATAC
GGCCTCACCGAACTTGATGCCGTTCTTGGACAAGATCTCGGGAAACACACATCCAAGTGCGCCAAGCATCGCCCACCTCGAGTGGATGACCTCGAGCTCC
CTGTTCTTGGCAAACGTCTCTGGGTCCGCCGACAACCCTGCGGTGTCCCACCCGTAGTCGCCGGGGAACTCGCCAGTCAAGTAAGATGGGGTCTGCTCCG
AGAATGGGCCTAGGTACTTGGGACGGTCAGGGCCGTACCTACATATTCA