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Detailed information on CNT30172025


BLAST search results

BLAST vs Swiss-Prot:
sp|P27520|CB215_PEA, E-value = 8e-125

BLAST vs NONCODE:
NONSTUT002514, E-value = 3e-71

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30317234Trifolium pratenseCorylus avellana19.1536.0584.62221forward
CNT30701193Trifolium pratenseQuercus lobata48.5344.4885.36560forward
CNT30374613Trifolium pratenseArabidopsis thaliana49.2262.6979.58568forward
CNT30500934Trifolium pratenseCoffea canephora29.3821.1380.53339forward
CNT3070976Trifolium pratenseQuercus suber32.1573.0383.56371forward
CNT30378978Trifolium pratenseManihot esculenta49.8350.1384575forward
CNT30631012Trifolium pratenseVigna unguiculata50.1745.5989.12579forward
CNT30711475Trifolium pratenseGlycine max35.3627.9889.46408forward
CNT30561790Trifolium pratenseActinidia chinensis45.2375.5479.69522forward
CNT30539463Trifolium pratenseBrassica napus36.8358.8679.53425forward
CNT30311404Trifolium pratenseCamelina sativa42.2974.2879.3488forward
CNT3077068Trifolium pratenseBrassica juncea42.6348.4779.88492forward
CNT30264606Trifolium pratenseBrassica rapa38.351.5879.86442forward
CNT30612591Trifolium pratenseArabis alpina50.1772.5678.58579forward
CNT30648173Trifolium pratenseRosa chinensis50.0933.2881.66578forward
CNT30204126Trifolium pratenseHelianthus annuus31.0269.9281.01358forward
CNT30625449Trifolium pratenseDaucus carota24.3530.5482.21281forward
CNT30480205Trifolium pratenseArabidopsis halleri42.8965.5680495forward
CNT30409807Trifolium pratensePapaver somniferum46.1972.3280.11533forward
CNT30119392Trifolium pratenseCitrus clementina50.8763.8780.92587forward
CNT3035928Trifolium pratenseCucumis melo21.4952.3283.87248forward
CNT30112551Trifolium pratenseFicus carica38.6572.0581.17446forward
CNT30723501Trifolium pratenseLupinus angustifolius30.3332.4189.14350forward

Expression of CNT30172025

Peptides detected in this lncRNA

>peptide 1 (68 aa)
MDQVWVAQIVKATLREDLGTSLKPDCLAEFNTILFKDFREGTSQCSKHSPSAVNYFKLTVLCKSFRVS*

>peptide 2 (44 aa)
MRYICFHHFKNGSCSCNNFCWHVADPCRATYRFCLCNYIGENRS*

>peptide 3 (52 aa)
MVRRAGPKLPALLMNSFPCLKPVLPVNADCWIAEVAMRALRFLAVVLFSVNS*

>peptide 4 (60 aa)
MVVKVLNRSLAGNNGLNKETKHGEHSQSAVLEFLHLQLCKCIRVISKTKRVKGTTRVKWV*

>peptide 5 (63 aa)
MDHVLAITFAGMLRILVEPHTGSACVITLVKIEVKLNTNANESRRLQLKRQPYLGILIVRGRS*

>peptide 6 (31 aa)
MERTLIRIIKNLQVCNDCHVVTDTSQLSIRS*

>peptide 7 (35 aa)
MENIANRPFLSSFTFNSANASGSSARPRGSKAPPG*

>peptide 8 (38 aa)
MHQGHQQDQEGQRHHQGKVGLILHQVVLHQFCNLQRIP*

Sequence

>CNT30172025
GAGAAGGAAAAATAAATTGAATTAGAGAACCGCAGTGAGAGTTGGCGATTTCATTTGGTCTCATCGATATGGAAAGAACTCTTATTCGCATTATAAAGAA
CCTTCAAGTCTGTAACGATTGCCATGTAGTTACCGACACCTCTCAGCTATCTATACGATCGTGAAATGAGGTACATCTGCTTTCATCATTTCAAAAATGG
ATCATGTTCTTGCAATAACTTTTGCTGGCATGTTGCGGATCCTTGTCGAGCCACATACAGGTTCTGCTTGTGTAATTACATTGGTGAAAATAGAAGTTAA
ACTCAACACAAATGCAAATGAGAGCAGAAGATTGCAGCTGAAGAGGCAGCCATATCTTGGCATTCTTATTGTCCGGGGACGAAGTTAGTAGCATATGCCC
ATGCGTTGTTGGCGACAGGGTCAGCAAGATGGTCGTAAAGGTTCTGAACAGGTCCCTTGCCGGTAACAATGGCTTGAACAAAGAAACCAAACATGGAGAA
CATAGCCAATCGGCCGTTCTTGAGTTCCTTCACCTTCAACTCTGCAAATGCATCAGGGTCATCAGCAAGACCAAGAGGGTCAAAGGCACCACCAGGGTAA
AGTGGGTCTAATCCTTCACCAAGTGGTCCTCCACCAATTCTGTAACCTTCAACGAATCCCATGAGCACAACCTGAGTAGCCCAGATTGCAAGAATGCTTT
GAGCATGGATCAAGTTTGGGTTGCCCAAATAGTCAAGGCCACCCTCAGAGAAGATCTGGGCACCAGCCTTAAACCAGACTGCCTCGCCGAATTTAACACC
ATTCTTTTCAAGGATTTCAGGGAAGGTACATCCCAATGCTCCAAGCATAGCCCATCTGCTGTGAATTACTTCAAGCTCACGGTTCTTTGCAAAAGTTTCA
GGGTCAGCTGATAAGCCAGCTGTGTCCCATCCGTAGTCACCAGGGAATTCACCAGTCAGGAGCACTCTTCACAGTACGACGCATGGTGAGGCGAGCTGGG
CCAAAGTTACCAGCTCTCCTGATGAACTCATTTCCTTGTCTCAAACCAGTCTTACCAGTGAATGCTGATTGTTGGATAGCAGAGGTGGCCATGAGGGCTT
TGAGGTTTCTTGCTGTTGTTCTCTTTAGTGTTAATAGCTAGCTAGTGTTGTTGT