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Detailed information on CNT30379012


BLAST search results

BLAST vs Swiss-Prot:
sp|P27518|CB21_GOSHI, E-value = 8e-146

BLAST vs NONCODE:
NONSTUT002514, E-value = 3e-86

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30317234Manihot esculentaCorylus avellana41.9455.6384.46341forward
CNT30374000Manihot esculentaArabidopsis thaliana65.1960.3679.81530forward
CNT3070976Manihot esculentaQuercus suber46.6274.6185.49379forward
CNT30526271Manihot esculentaPhaseolus vulgaris23.8629.1384.54194forward
CNT30711475Manihot esculentaGlycine max49.9427.8585.71406forward
CNT30561790Manihot esculentaActinidia chinensis65.1976.782.64530forward
CNT30539463Manihot esculentaBrassica napus63.7171.7578.19518forward
CNT30510148Manihot esculentaSolanum lycopersicum32.7262.7481.58266forward
CNT30311404Manihot esculentaCamelina sativa62.6177.4777.8509forward
CNT30264606Manihot esculentaBrassica rapa64.761.3877.95526forward

Expression of CNT30379012

Peptides detected in this lncRNA

>peptide 1 (74 aa)
MLNLILPSFSRNKVSSICPCIVGHWISQVIKEVLNWSLSSYNSLNKEPKHGKHCQASVLNLFHLQFCKCIRIIS*

>peptide 2 (35 aa)
MENIAKRPFLISFTFNSANASGSSANPRGSKAPPG*

>peptide 3 (54 aa)
MHQDHQLTPEGQRHHQGKWGQVLHRVVLHQLYSLQQIPLAQPELPRLQGCSERG*

Sequence

>CNT30379012
CAGAGGTCAGGCATGAGAATTCTGATCTCATGTTCTGTTGATACAATGTTTTCACTACTAAAACACAAGTAGAGTAATGACGACGTCCACTACAAGAACA
TTTCCAGAAATTTAAAATACTGGTACTGAGATGTTGAACTTGATTCTCCCTTCATTTTCCAGGAACAAAGTTAGTAGCATATGCCCATGCATTGTTGGCC
ACTGGATCAGCCAAGTGATCAAAGAGGTTCTCAATTGGTCCCTTTCCAGTTACAATAGCCTGAACAAAGAACCCAAACATGGAAAACATTGCCAAGCGTC
CGTTCTTAATCTCTTTCACCTTCAATTCTGCAAATGCATCAGGATCATCAGCTAACCCCAGAGGGTCAAAGGCACCACCAGGGTAAATGGGGTCAAGTCC
TTCACCGAGTGGTCCTCCACCAACTCTATAGCCTTCAACAAATCCCATTAGCACAACCTGAACTGCCCAGATTGCAAGGATGCTCTGAGCGTGGATAAGG
TTAGGGTTGCCAAGATAATCAAGACCGCCTTCTGAAAAGATTTGGGCTCCAGCTTTGAACCAGACTGCCTCGCCAAATTTGACACCATTCTTGGATAGGA
TTTCGGGGAAGACGCAGCCAAGTGCACCAAGCATAGCCCATCTGCAGTGGATCACCTCAAGCTCACGGTTCTTGGCAAATGTCTCTGGATCTGCAGACAA
ACCAGCAGTGTCCCATCCATAATCACCGGGGAATTCACCAGTAAGCAAATGCAGAGTGTTGGATTGCAGAGGTTGCCATGTCTAAATTACTTTGTGAAGA
GGAGGTGTCTGTC