Detailed information on CNT30539463


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9XF87|CB24_ARATH, E-value = 6e-110

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30701193Brassica napusQuercus lobata64.2736.8579.74464forward
CNT30374000Brassica napusArabidopsis thaliana73.4160.3691.51530forward
CNT3070976Brassica napusQuercus suber39.3455.9182.39284forward
CNT30379012Brassica napusManihot esculenta71.7563.7178.19518forward
CNT30711475Brassica napusGlycine max55.6827.5780.35402forward
CNT30561790Brassica napusActinidia chinensis71.8875.1179.19519forward
CNT30172025Brassica napusTrifolium pratense58.8636.8379.53425forward
CNT30311404Brassica napusCamelina sativa72.8580.0688.59526forward
CNT3074635Brassica napusBrassica juncea45.7152.2299.7330forward
CNT30119392Brassica napusCitrus clementina41.5532.6481.33300forward

Expression of CNT30539463

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MARRPFLSSFTFNSAKASGSSARFNGSNAPPG*

Sequence

>CNT30539463
TTTATTCATTCATATGCCAAATATCCATTCAATGAAAAGAGCCAGTCACTAAGTACATAAACACGAACAATACATTAATGGGTTTTACAAAGTAGATAAA
ACGGTGAAGCAAATCCATACGATAATTAGTTACTTTCCGGGGACAAAGTTGGTAGCGTAAGACCAGGCGTTGTTAGCCACAGGATCCGCCAAGTGATCAA
ACAAGTTCTCGATGGGGCCTTTACCAGTAACAATGGCTTGAACAAAGAATCCAAACATCGAGAACATGGCAAGACGCCCGTTCTTGAGCTCCTTCACCTT
CAACTCAGCGAAGGCCTCTGGGTCCTCCGCCAGATTCAACGGGTCGAACGCACCTCCAGGGTAAAGCGGGTCAAGACCTTCACCGAGAGGACCACCTCCG
ATTCTGTACCCTTCGATGAGGCCCATGAGCACAACTTGACAAGCCCATATGGCTAAGATGCTTTGCGCGTGGATCAAGTTAGGGTTTCCGAGGTAATCGA
GGCCTCCTTCTGAGAAGATCTGGGATCCTGCCTTGAACCACACGGCTTCTCCGAATTTGACTCCGTTCTTGGAGAGAATCTCGGGGAATGTGCAGCCTAG
AGCTCCCAGCATTGCCCATCTGCTGTGGATTACTTCGAGCTCACGGTTCTTAGCGAATGAGGATTGCTGGATTGCTGACGTGGCCATTTCTTATCCAAGT
CTTAACTAGAAGGATTGAAGAG