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Detailed information on CNT30556129


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690671Oryza glaberrimaOryza sativa60.5414.47100267reverse complement
CNT30678334Oryza glaberrimaSetaria viridis30.3913.7798.51134reverse complement
CNT30488794Oryza glaberrimaOlea europaea26.9854.8496.64119reverse complement
CNT30300194Oryza glaberrimaTriticum aestivum60.5412.6997.75267reverse complement
CNT30543269Oryza glaberrimaBrassica napus26.984.0292.44119reverse complement
CNT3059312Oryza glaberrimaArabidopsis lyrata59.6447.9992.4263reverse complement
CNT30136937Oryza glaberrimaLolium perenne31.0721.6890.51137reverse complement
CNT3017926Oryza glaberrimaZea mays30.3935.0899.25134reverse complement
CNT30128547Oryza glaberrimaCorymbia citriodora22.226.8586.7398forward
CNT30623007Oryza glaberrimaDaucus carota60.5457.389.14267reverse complement
CNT30153780Oryza glaberrimaPrunus persica61.4530.2891.51271reverse complement
CNT30115844Oryza glaberrimaOryza nivara40.5920.55100179reverse complement
CNT30603929Oryza glaberrimaOryza punctata31.0734.3499.27137forward
CNT30726938Oryza glaberrimaLupinus angustifolius41.2788.3586.26182forward

Expression of CNT30556129

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MIWHVQNENFILDSTRIFMKAFHLLLFQGSFI

>peptide 2 (37 aa)
MDPYISIGKESIEGESDDIFLETNKKEKKEKTEIMIN*

Sequence

>CNT30556129
ATAGAATGGCAGAGGCAAATAGAGCTCTTGCACATTTTCGTTAATCCATGAACAGAATCTAGGTTTGTAGACACATGGATCCATACATCTCGATCGGAAA
AGAATCAATAGAAGGAGAATCGGACGATATCTTTCTCGAAACAAACAAAAAGGAAAAGAAAGAGAAAACAGAAATCATGATCAACTAAGCCCTCTCGGGG
GCTTGCTTAAGAATAAGAAAGAGGAATCTTATGGAAATAGCATGGAATAAGGTTTGATCCTATTCATGGGGATTCCGTAAATATCCCATTCCAAAAATCG
AAACAATCGGGACTTTTCGGAGATTGGATGCAGTTACTAATTCATGATCTGGCATGTACAGAATGAAAACTTCATTCTCGATTCTACGAGAATTTTTATG
AAAGCGTTTCATTTGCTTCTCTTCCAGGGAAGTTTCATTTT