Detailed information on CNT30623007


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONVVIT001950, E-value = 7e-58

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690671Daucus carotaOryza sativa99.3625.0990.28463forward
CNT3021542Daucus carotaCitrullus lanatus39.4830.8797.28184forward
CNT30488794Daucus carotaOlea europaea41.4288.9497.93193forward
CNT30502479Daucus carotaNicotiana attenuata25.3214.2988.14118reverse complement
CNT30637929Daucus carotaCapsicum annuum22.963.7596.26107reverse complement
CNT3093184Daucus carotaSolanum tuberosum43.7821.3885.29204forward
CNT30300194Daucus carotaTriticum aestivum99.3622.0189.85463forward
CNT30556129Daucus carotaOryza glaberrima67.671.4388.25315reverse complement
CNT3059312Daucus carotaArabidopsis lyrata91.6377.9292.97427forward
CNT30153781Daucus carotaPrunus persica10041.7693.99466forward
CNT3099667Daucus carotaOryza rufipogon56.0111.3894.64261forward
CNT30575988Daucus carotaOryza barthii33.4811.0191.03156forward
CNT30111895Daucus carotaFicus carica19.12593.2689forward

Expression of CNT30623007

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MKGFHKNSRRIENEVFILYMPDHELVTASNFQKKSQLFRTFHF*

Sequence

>CNT30623007
TCTCCATTGGAACAAGAGGGCCGTTATGCTCATTACTAAACTTGTTGAAGAGATGAAATATAACCAAGGTATATCTTTTTGATCAGAGGTTGAATCGATC
ATCAGAAGAAGAATTAGGCCAAAAATTAGGATACATTCTGGGACAATCAAACTTCCATCGAAGAGAAGCAAATGAAAGGCTTTCATAAAAATTCTCGTAG
AATCGAGAATGAAGTTTTCATTCTGTACATGCCAGATCATGAATTAGTAACTGCATCCAATTTCCAAAAAAAATCCCAATTGTTTCGAACTTTCCATTTT
TAGAATGGAATATTTACGGAATCTCCATGAATAGGACCAAACCTTATTCCATGGTATTTACATGAGGTTCCTCTTTCTTATTCTTGAGAAAGTCCCTGAG
AGGGCTTAGTTGATCCATGATATCTGTTTTATCTTTTGTTTCCCTTTCTTTTGTTTCGAGAAATAT