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Detailed information on CNT3059312


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9XQ96|NU2C_BRANA, E-value = 1e-73

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690671Arabidopsis lyrataOryza sativa100.1829.7694.35549forward
CNT30617122Arabidopsis lyrataSesamum indicum15.5138.8185.8885reverse complement
CNT3021542Arabidopsis lyrataCitrullus lanatus57.6653.0298.73316forward
CNT30488794Arabidopsis lyrataOlea europaea25.9165.4498.59142forward
CNT30502479Arabidopsis lyrataNicotiana attenuata21.5314.2987.29118reverse complement
CNT3093184Arabidopsis lyrataSolanum tuberosum37.2321.3885.29204forward
CNT30300194Arabidopsis lyrataTriticum aestivum100.1826.0993.81549forward
CNT30543269Arabidopsis lyrataBrassica napus25.184.6697.1138forward
CNT30556129Arabidopsis lyrataOryza glaberrima50.1862.3692.36275reverse complement
CNT30623007Arabidopsis lyrataDaucus carota77.9291.6392.74427forward
CNT30153781Arabidopsis lyrataPrunus persica101.0949.6495.31554forward
CNT30150988Arabidopsis lyrataBrachypodium distachyon50.3615.8189.86276forward
CNT3099667Arabidopsis lyrataOryza rufipogon61.514.795.85337forward
CNT30575988Arabidopsis lyrataOryza barthii52.5520.3294.1288forward
CNT30115844Arabidopsis lyrataOryza nivara34.1221.4791.44187forward
CNT30111895Arabidopsis lyrataFicus carica16.242595.5189forward
CNT30726938Arabidopsis lyrataLupinus angustifolius21.5357.2892.37118reverse complement

Expression of CNT3059312

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MKGFHKNSRRIENEIFILYMPDHELVTASNLQKKPNF*

Sequence

>CNT3059312
CATTTCTGTACATTCAATGTACTCTACGGATAGAGGAATACAGAGAGTTGAACATAGTAAAATAAGAAATTGAAAGATTTCGTTGAAATTGTTCGTTTGG
AAATTTCCTGAAAAGCTAATCATAGGTTCTTCTCTCCATCGGAACAATAGGGCCGTTATGCTCATTACGAAACTTGTTGAAGAGATGAAATATAACCAAG
GTATATCTTTTTGATCAGAGGTTGAATCGATCATCAGAAGAAGAATTAGGCCAAAAATTAGGATACATTCTGGGAAAATAAAACTTCCATCGAAGAGAAG
CAAATGAAAGGCTTTCATAAAAATTCTCGTAGAATCGAGAATGAAATTTTCATTCTGTACATGCCAGATCATGAATTAGTAACTGCATCCAATCTCCAAA
AAAAACCCAATTTTTGATTTTTGGAATGGAATATTTACGGAATCCCCATGAATAGGATAAAACCTTATTCCATGGTATTTACATGAGATTGCTCTTTCTT
ATTCTTAAGCAAGTCCCCGAGAGGGCTTAGTTGATCCATGATTTCTGT