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Detailed information on CNT30678334


BLAST search results

BLAST vs Swiss-Prot:
sp|A8Y9D1|RR7_LOLPR, E-value = 3e-61

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30201813Setaria viridisPisum sativum30.2217.9494.22294forward
CNT30710142Setaria viridisGlycine max17.9939.2492.57175forward
CNT30556129Setaria viridisOryza glaberrima13.7730.3998.51134reverse complement
CNT30351849Setaria viridisEragrostis tef14.836.1895.83144reverse complement
CNT30100515Setaria viridisOryza rufipogon2699.6191.3253reverse complement

Expression of CNT30678334

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MLTNRLRKIGSDFAVLFSAVPRRDMSVKEFRIESL*

>peptide 2 (31 aa)
MRYLTPGKSLTLPPLTNTTECSCKLWPIPGI*

>peptide 3 (64 aa)
MDPCVYIPRFCSWINENAQELYLPLPFYDALPCLDPISIGTFRVDPFLLRLVFTPILGVTLRIA*

>peptide 4 (29 aa)
EGLVDHDFCFLFLFLFICFEKDIVRFSFY*

>peptide 5 (39 aa)
MISVFSFFSFLFVSKKISSDSPSIDSFPIEMYGSMCLHT*

Sequence

>CNT30678334
GAGGGCTTAGTTGATCATGATTTCTGTTTTCTCTTTCTTTTCCTTTTTATTTGTTTCGAAAAAGATATCGTCCGATTCTCCTTCTATTGATTCTTTTCCG
ATCGAGATGTATGGATCCATGTGTCTACATACCTAGATTCTGTTCATGGATTAACGAAAATGCGCAAGAGCTCTATTTGCCTCTGCCATTCTATGATGCT
CTTCCTTGTTTAGATCCTATTTCAATCGGAACTTTCCGCGTCGATCCTTTTTTATTACGTCTTGTTTTTACTCCTATATTGGGAGTTACTCTACGTATTG
CTTGACGTAAAACCAATAGTGGATTTGTTTCTGTCTTTTGTTGAATCTTTTTCACGGCTCGATAGAGAATTTGATAAGCCAATGATTTTTTTCCGTCTTT
CATAATACGGTTAACCACCATGTTAACTAATCGATTACGAAAAATTGGATCGGATTTTGCGGTTCTTTTTTCTGCAGTACCTCGACGTGACATGAGCGTG
AAAGAGTTCCGAATCGAATCTCTTTAGAAAGAAGATCTTTTGTCTCATGGTAGCCTGCTCCAGTCCCCTTACGAAACTTTCGTTATTGGGTTAGCCATAC
ACTTCACATGTTTCTAGCGATTCACATGGCATCATCAAATGATACAAGTCTTGGATAAGAATCTACAACGCACTAGAACGCCCTTGTTGACGATTCTTTA
CTGCGACAGCATCTAGGGTTCCTCGAATAATGCGATATCTCACACCGGGTAAATCCTTAACCCTTCCTCCTCTTACTAATACTACAGAATGTTCTTGTAA
ATTATGGCCAATACCAGGTATATAAGCAGTGATTTCAAATCCAGAGGTTAATCGTACTCTGGCAACTTTACGTAAGGCAGAGTTGGGTTTTTTGGGGTTG
ATAGTGGAAAAGTCGACAGATAAGTCATCCTTACTGTCCCTCTACAGAACCGTACATGAGATTTTCACCTCAT