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Detailed information on CNT30603929


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695659Oryza punctataOryza sativa42.112098.81168reverse complement
CNT30677883Oryza punctataSetaria viridis41.3511.0698.18165reverse complement
CNT30617775Oryza punctataSesamum indicum20.812.5491.5783reverse complement
CNT30198866Oryza punctataPisum sativum20.825.4691.5783reverse complement
CNT30300194Oryza punctataTriticum aestivum42.117.9897.62168reverse complement
CNT30543269Oryza punctataBrassica napus34.844.787.77139reverse complement
CNT30556129Oryza punctataOryza glaberrima34.3431.0799.27137forward
CNT30598987Oryza punctataFraxinus excelsior20.82.7993.9883reverse complement
CNT30136937Oryza punctataLolium perenne42.1126.5891.67168reverse complement
CNT3017926Oryza punctataZea mays41.3543.1998.79165reverse complement
CNT30153780Oryza punctataPrunus persica34.8415.5390.65139reverse complement
CNT30150988Oryza punctataBrachypodium distachyon42.119.6297.62168reverse complement
CNT30115844Oryza punctataOryza nivara42.1119.2998.81168reverse complement

Expression of CNT30603929

Peptides detected in this lncRNA

>peptide 1 (62 aa)
IPFFICFPIFQSEKKQIKKQMYSIRKRKERGKQKEREGFEPSIVPRTIPVFKTGAINRGCYT*

>peptide 2 (37 aa)
MDPYISIGKESIEGESDDIFLETNKKEKKEKTEIMIN*

>peptide 3 (45 aa)
HSFLHLLSYLPERKKTNKETNVFNTQKKRERKAKGERGIRTLDSS*

Sequence

>CNT30603929
TCATTCCTTTCTTCATCTGCTTTCCTATCTTCCAGAGCGAAAAAAAACAAATAAAGAAACAAATGTATTCAATACGCAAAAGAAAAGAGAGAGGAAAGCA
AAAGGAGAGAGAGGGATTCGAACCCTCGATAGTTCCTAGAACTATACCGGTTTTCAAGACCGGAGCTATCAACCGGGGGTGCTATACGTAAAAAGGAAGC
GACTCATAGAATGGCAGAGGCAAATAGAGCTCTTGCACATTTTCGTTAATCCATGAACAGAATCTAGGTATGTAGACACATGGATCCATACATCTCGATC
GGAAAAGAATCAATAGAAGGAGAATCGGACGATATCTTTCTCGAAACAAACAAAAAGGAAAAGAAAGAGAAAACAGAAATCATGATCAACTAAGCCCTC