Detailed information on CNT30690671


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CC48|NU2C1_COFAR, E-value = 3e-177

BLAST vs NONCODE:
NONOSAT000698, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3021542Oryza sativaCitrullus lanatus31.7198.1595.9585forward
CNT30488794Oryza sativaOlea europaea7.765.4497.18142forward
CNT30300194Oryza sativaTriticum aestivum35.8331.4298.79661forward
CNT30556129Oryza sativaOryza glaberrima14.4760.54100267reverse complement
CNT3059312Oryza sativaArabidopsis lyrata29.1197.9994.41537forward
CNT30623007Oryza sativaDaucus carota22.4989.0691.08415forward
CNT30687250Oryza sativaTriticum urartu17.3436.5399.06320forward
CNT30153781Oryza sativaPrunus persica45.377594.38837forward
CNT30425623Oryza sativaPapaver somniferum12.7451.5492.77235forward
CNT30150988Oryza sativaBrachypodium distachyon23.8525.297.5440forward
CNT30575988Oryza sativaOryza barthii15.7720.5497.94291forward
CNT30111895Oryza sativaFicus carica4.822591.0189forward
CNT30726938Oryza sativaLupinus angustifolius9.8688.3586.26182reverse complement

Expression of CNT30690671

Peptides detected in this lncRNA

>peptide 1 (72 aa)
MAPPPPLAASTNSELNLKAIFRPGRFWDASNNQRMASALPCLDPISIGTFRVDPFLLRLVFTPILGVTLRIA*

>peptide 2 (46 aa)
MIFFPSFIIRLTTMLSFFRLLPDLGVFLVSPGKAPRRRIFLKRGPR*

>peptide 3 (39 aa)
MISVFSFFSFLFVSRKISSDSPSIDSFPIEMYGSMCLHT*

>peptide 4 (30 aa)
MKTPFFIEISFYTINFIVFTLQNTSKLKLN*

>peptide 5 (29 aa)
GKSSVLVGVGIAFLFCISMEFCKTQTPQR*

>peptide 6 (29 aa)
MCKSSICLCHSMSRFLFAYGTPTPFGSIY*

>peptide 7 (51 aa)
MDPCVYIPRFCSWINENVQELYLPLPFYESLPFCVWHPHPLWQHLLIRNLI*

>peptide 8 (50 aa)
MKRFHKNSRRIENEVFILYMPDHELVTASNLRKVPIVSIFGMGYLRNPHE*

Sequence

>CNT30690671
GGTAAAAGTTCTGTCTTGGTCGGAGTGGGGATAGCATTTCTCTTCTGCATATCTATGGAGTTTTGCAAAACCCAAACACCTCAGAGATAGATATAGAGGT
AGGAATTTGTCGAACGAACCACACTCCTTCGTAGACGTCAGGAGTCCATTGATGAAAAGGGGCTGGGGAAAGCTTGAACCCAAGTCCTACAGTGATGGAT
ATAAGCGCAATTGAAATTCCTAGGGAGTTATACATTTGTGTATTGATAAGACCGTTCACAATTTCTTGAAGCTCGATCTCCCCCCCAGATGAACCATATA
GCCAAGAGAAACCATGAACCAGAATAGAAGAGCTTGCCCCACCCATGAGTAAATATTTCATAGTAGCCTCATTAGACCGTAGATCTCTCTTGGTATATCC
AGACAATAGGTAGGAACATAAACTGAAACATTCTGGAGCTACAAAGATAGTTATTAAATCGTTAGCACCACATAAAAACATTCCCCCTAGAGTAGCTGTT
AATACGAATAACAGAAACTCTGTTATAGCCATTTCTGTACATTCAATGTACTCTACGGATAGAGGAATACATAAAGTTGAACATAATAAAATAAGAAATT
GAAAGATTTCGTTGAAATTGTTCGTTTGGAAATTTCCCGAAAAGCTAATTATAGGTTCTTCTCTCCATCGGAACAATAGGGCCGTTATGCTTATTACTAA
ACTTGTTGAAGAGATGAAATAGAACCAAGGTCTATCTTTTTGATCAGAGGTTAAATCGATCATCAGAAGAAGAATTAGGCCAAAAATTAGGATACATTCT
GGGAAAATGAAACTTCCCTGGAAGAGAAGCAAATGAAACGCTTTCATAAAAATTCTCGTAGAATCGAGAATGAAGTTTTCATTCTGTACATGCCAGATCA
TGAATTAGTAACTGCATCCAATCTCCGAAAAGTCCCGATTGTTTCGATTTTTGGAATGGGATATTTACGGAATCCCCATGAATAGGATCAAACCTTATTC
CATGCTATTTCCATAAGATTCCTCTTTCTTATTCTTAAGCAAGCCCCCGAGAGGGCTTAGTTGATCATGATTTCTGTTTTCTCTTTCTTTTCCTTTTTGT
TTGTTTCGAGAAAGATATCGTCCGATTCTCCTTCTATTGATTCTTTTCCGATCGAGATGTATGGATCCATGTGTCTACATACCTAGATTCTGTTCATGGA
TTAACGAAAATGTGCAAGAGCTCTATTTGCCTCTGCCATTCTATGAGTCGCTTCCTTTTTGCGTATGGCACCCCCACCCCCTTTGGCAGCATCTACTAAT
TCGGAACTTAATTTGAAAGCCATATTTCGACCCGGACGCTTTTGGGATGCTTCTAATAACCAACGAATGGCAAGTGCTCTTCCTTGTTTAGATCCTATTT
CAATCGGAACTTTCCGCGTCGATCCTTTTTTATTACGTCTTGTTTTTACTCCTATATTGGGAGTTACTCTACGTATTGCTTGACGTAAAACCAATAGTGG
ATTTGTTTCTGTCTTTTGTTGAATCTTTTTCACGGCTCGATAGAGAATTTGATAAGCCAATGATTTTTTTTCCGTCTTTCATAATACGGTTAACCACCAT
GTTAAGCTTTTTCAGATTACTTCCGGATTTAGGTGTTTTTCTAGTGAGTCCTGGTAAAGCTCCCAGACGGCGTATTTTTTTAAAACGAGGTCCTCGATAA
CGGGACATGAAGACTCCTTTTTTTATTGAAATTTCATTTTACACAATTAATTTCATTGTATTTACATTACAGAATACATCGAAATTAAAACTGAATTAAA
GTAAAGGATAAACAGAGTAAAATCTACTAAAAGTACCACAAAAAA