Detailed information on CNT3038524


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT002426, E-value = 6e-109

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30548493Cucumis meloIpomoea triloba17.9921.0785.29170forward
CNT30164425Cucumis meloPistacia vera54.7127.8688.59517forward
CNT30193415Cucumis meloSecale cereale17.6729.7291.02167forward
CNT30221243Cucumis meloHordeum vulgare57.8825.3883.18547reverse complement
CNT30371226Cucumis meloOryza glumipatula24.0279.6585.46227reverse complement
CNT30104396Cucumis meloOryza rufipogon57.8850.9383.91547reverse complement

Expression of CNT3038524

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MSTGLRGGFSTQANRPTLLQHRDRREKVVKVASLSTPLVG*

>peptide 2 (48 aa)
MSVGGSWSACQGLPRIPRGDHHHLHLTSRHSGTCNPPAVSFNYICSFL*

>peptide 3 (61 aa)
MNRSLFKGTRESAAYTRISFRGQAVSILNYRIDLRIHAGLGHLEWREPHAGRPARTVFRGIW

>peptide 4 (50 aa)
HEAADAESAPMPLAMPCLVPRHGGGSVARHEHRAKGRFFYSSEPPYLTTT*

>peptide 5 (56 aa)
MEGFSPIFKGLIQGSVWSKDLYGSASILGKRGENTLSVELNYIFPIDKRSESPFNE*

Sequence

>CNT3038524
CACGAAGCCGCTGACGCCGAGTCGGCTCCTATGCCGCTAGCTATGCCCTGCTTGGTCCCCCGACACGGTGGAGGTTCCGTAGCGCGTCATGAGCACCGGG
CTAAGGGGCGGTTTTTCTACTCAAGCGAACCGCCCTACCTTACTACAACATAGGGACAGAAGGGAGAAGGTTGTGAAGGTGGCCTCGTTATCCACACCTC
TGGTCGGATGAATGGAGGACCTCCAAGAAAAAAGCCTAGGGTTTGAATGAGCGTTGGCGGGTCCTGGAGTGCCTGTCAAGGGCTCCCGCGCATACCCCGG
GGTGATCATCACCACCTGCACCTCACATCTCGGCACAGTGGAACGTGTAACCCGCCTGCTGTCTCATTCAACTACATTTGTTCCTTCCTATAATCCATAG
CCTAAGATCAGGCAGCAGCGAGGGGCAACCTGCCCATACAGCCAGCGGGGAGGATGGCACTACTGGCAAAGACCGTCTGGCGAAAACGCCGCAGGCGCGA
AGCGTGGTAGGCCTGCGCCGGGGGGGAGCATAGCATAGGCGGGAAAGGGAGCCCGGACGGTGGAAGAGCCAGGGGAGGCCGGGTCATTTGACGGAAATGG
AAGGCTTTTCCCCTATTTTCAAAGGCCTCATTCAAGGTTCCGTCTGGTCGAAAGATCTTTATGGAAGTGCATCAATTCTTGGAAAAAGAGGTGAGAATAC
CCTATCGGTCGAGCTCAATTACATCTTTCCTATAGACAAAAGATCAGAAAGTCCATTCAATGAATAGATCTCTTTTCAAGGGTACGAGAGAGAGCGCTGC
CTACACGCGAATTAGCTTCCGAGGTCAAGCAGTCTCAATATTGAACTACAGGATTGATTTGCGAATTCATGCTGGGCTGGGCCACCTCGAATGGCGTGAG
CCGCATGCGGGGAGACCCGCACGTACGGTTTTTAGGGGGATCTGG