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Detailed information on CNT30297416


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674307Triticum aestivumSetaria viridis44.3915.0698.04613forward
CNT30548493Triticum aestivumIpomoea triloba34.0358.2492.98470reverse complement
CNT30619472Triticum aestivumSesamum indicum19.742.591.91272reverse complement
CNT30405732Triticum aestivumBeta vulgaris51.1957.1188.68707forward
CNT30164425Triticum aestivumPistacia vera49.3136.6991.63681reverse complement
CNT30194250Triticum aestivumSecale cereale10051.6399.351381forward
CNT30592657Triticum aestivumMusa acuminata49.0919.2587.02678forward
CNT30554880Triticum aestivumOryza glaberrima18.6820.297.67258forward
CNT30681493Triticum aestivumTriticum urartu80.1666.1799.371107forward
CNT30104344Triticum aestivumOryza rufipogon46.3439.6396.25640forward
CNT30726873Triticum aestivumLupinus angustifolius15.8670.1992.24219forward

Expression of CNT30297416

Peptides detected in this lncRNA

>peptide 1 (84 aa)
MLRMLHHGIDRFSSPSFPVHSLCISDTQGRTRWEESCPSLCPVDHSAGILHSRLRLTAARECSCRYVSLSGSLAPPLISFYDML*

>peptide 2 (69 aa)
MRTSFPFALPTLRSHGYQSGGRAGSRYHEPSVPHIYQEASVVHRFHRMLLSLGKDRVSVQLCFGCFTME*

>peptide 3 (33 aa)
MSGAPSLGGAFVEPNRRKSKRARPHPASNRRGA*

>peptide 4 (37 aa)
ETLRQLFRTRSLASHTQVLSEPCNKVTHNTSLPLELP*

>peptide 5 (51 aa)
KLYDSFFVHVHLHHIHKCSLNRAIRSPITRLSHWSYLSPGPCYSMILEKVD*

Sequence

>CNT30297416
GAAACTTTACGACAGCTTTTTCGTACACGTTCACTTGCATCACATACACAAGTGCTCTCTGAACCGTGCAATAAGGTCACCCATAACACGTCTCTCCCAC
TGGAGTTACCTTAGCCCCGGGCCATGCTATTCCATGATATTGGAAAAAGTTGACTAATTATTATCATCGTCTTGAAAGCTGGGCGCCTTTTGAATATGAG
TGGGGCTCCTAGTCTAGGCGGCGCCTTCGTGGAGCCAAACCGAAGGAAGAGCAAAAGGGCGAGGCCACACCCGGCTTCGAATAGGAGGGGGGCTTAGCTC
TGGATCCCGCCTGCTTGCAGAAATGAATGGATCAGAAAGGGGGCTGGGTTCTATTTCCGGGCCGGGCAGGAGGTGAAGGCCAGAAGAAGAAGAGAAGTGC
GCCTTCCCGGTAAGGAAGAGGATAAAAAGGTGCTGTCATCTATCTCGACCTGTTTCCCGAGGCGTTGGAAATGAAGACCGGCTCAGAGAATCACTGGCGT
GCTTTCTCTCCCCCATCGTTTCGCCAACAAAGAAGTCATCCTTGACTTGACTATTGACCATTCCATCCCTACCGAGCCGCCTCTTCGAAGTATTTACCTC
TGCCTTTCCTTTTTGAGAACATACCCTTCAAATCAAAAAGAAAAAAAGAAAGAAAAGTTCCTCGTCTGTGATTTAATCAGCCCTAAGGGAGTTTACTCGA
CCCATTCCCCAGTCTCCCGCACTGCTCAAGTGTGCGACTCCGTATGAGGACCTCCTTCCCTTTTGCTCTGCCCACTCTCCGTTCACACGGTTATCAAAGC
GGAGGAAGGGCGGGCAGCAGGTACCACGAGCCCTCTGTCCCACACATCTATCAAGAAGCAAGTGTAGTTCACCGGTTCCACCGAATGCTCCTATCTCTCG
GCAAAGATCGCGTGAGTGTGCAGTTATGCTTCGGATGCTTCACCATGGAATAGATCGATTCAGTTCCCCTTCTTTTCCGGTGCACTCGCTTTGTATCTCC
GACACACAAGGAAGGACGCGGTGGGAAGAAAGCTGCCCTAGCCTCTGTCCGGTCGATCATTCCGCTGGCATCTTGCATTCACGCCTCCGTTTGACTGCCG
CTCGGGAATGTAGTTGTAGATACGTGAGTCTTAGTGGGTCGTTGGCTCCACCTCTTATCTCCTTCTACGACATGCTGTAGTCGTCGCCATATTCAATATG
TCACTTAGTCATATCTGCCTCGCAGCGGGTCAGCACCTCCGAAAGAAAGGGAGGGAGGACTTCATTCAGTGACTCCGCGATCGCCCTCTAAACGATCAAA
ATAAGGTAAAGCTTGAAGATAAGTTTTGTACTCGATTAATTTCTCAGTCCCTCTAGTCGGTGATCCAATATGTGGTTCCGC