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Detailed information on CNT30405728


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30548493Beta vulgarisIpomoea triloba46.9965.891.9531forward
CNT30164425Beta vulgarisPistacia vera69.3842.2488.78784forward
CNT30510913Beta vulgarisSolanum lycopersicum29.0344.0989.33328forward
CNT30104396Beta vulgarisOryza rufipogon31.6833.3389.11358reverse complement

Expression of CNT30405728

Peptides detected in this lncRNA

>peptide 1 (29 aa)
HAGRPARRVFRGIRSKDRLAPTQLEGLRN*

>peptide 2 (52 aa)
MLSSPPHLSLCVRDIKRVHRKRTGTDSIYSMAKHPKHNCTLTRSLPRDKSIW*

>peptide 3 (42 aa)
MQVNMYVKVVSRVSSSFRRRPYLCFYDGPRTRSFFSCRETFEL

>peptide 4 (39 aa)
MRDASGMIGQIEARDAFFPTASFLVCQRYKASAPEKNGN*

Sequence

>CNT30405728
CATGCGGGGAGACCCGCACGTAGGGTTTTTAGGGGGATCCGGTCGAAAGACCGGCTGGCGCCCACCCAACTAGAGGGACTGAGAAATTAATAGAGTACAA
AACTTATCTTCACGCTTTACCTTATTTTGATCGTTTAGAGGGCGATCGCAGAGTCACTTAATGAAATCCTCCGTTTCTTTCGGAGATGCTGACCCGCAGC
GAAGCAGAGATGACTAAGTGACATATAGAATATGGCAACGACAACATCATGTCATAGAAGGAGATAAGAGGTGGAGCCAACGACCCACTAAGACTAACGT
ATCTACAACTACATCCCCGAGCAGCAGTCAAACGAGGGCGTGAATGCGAGATGCCAGCGGAATGATCGGCCAAATAGAGGCTAGGGATGCTTTCTTCCCC
ACCGCATCTTTCCTTGTGTGTCAGAGATATAAAGCGAGTGCACCGGAAAAGAACGGGAACTGACTCGATCTATTCTATGGCGAAGCATCCAAAGCATAAT
TGCACACTCACACGATCTTTGCCGAGAGATAAGAGCATTTGGTGAAACCGGTGAACTACACTTGCTTTTGGATATATGTGTGGGGCAGAGGGCTCGTGGT
ACCTCCTGCTCACCCGTCCTCCTCTGCTTTGAGAACCGTATGAACGGAGCGTGGTCAGAAGGGAAGGAGGTCCTCATATGGAGTTGCACACTTACTTGAG
CAGTGCGAGAGACTAGGAAATGGGTTGAGTAAAATCCCTTGGGGCCAGAAAAATAACAGACAAGACTTGACTTAGATAGTGATTTTCTTTTTTCTTAGTG
ATTGGAAAGTACGGCTCCTATTGACTAGACGTCAACCTCCCTCAATCAAAGGGAGACCCGTTTTCCATACTAGTTGTTAGGTTATGCTGTCATTTTTACA
ATATCATTGAATAGCATGGCCTGGGGTAAGGTAACTCAAGTAGGAGAGCCGTGTTATGGGTGACCTTATTGCACGATTCAGAGAACACTTGTGTATGTGA
TGCAAGTGAACATGTATGTAAAAGTTGTATCTAGGGTGAGTTCTTCGTTCCGTCGTCGACCCTATCTATGTTTCTATGATGGCCCAAGAACACGCTCATT
CTTCAGCTGTAGAGAGACTTTTGAATTGCG