Detailed information on CNT30614007


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30522780Arabis alpinaSetaria italica24.7917.7588150forward
CNT30515289Arabis alpinaJuglans regia23.1429.2382.14140forward
CNT3021461Arabis alpinaCitrullus lanatus22.9823.9284.17139forward
CNT30223130Arabis alpinaHordeum vulgare19.0145.6382.61115forward
CNT30510806Arabis alpinaSolanum lycopersicum16.6934.9590.1101forward
CNT30145283Arabis alpinaMedicago truncatula12.8922.7487.1878forward
CNT3061823Arabis alpinaArabidopsis lyrata46.2838.4185280forward
CNT30683744Arabis alpinaTriticum urartu17.8524.2284.26108forward
CNT3056582Arabis alpinaAmborella trichopoda23.822.3388.19144forward
CNT30582481Arabis alpinaEchinochloa crusgalli24.6331.9783.89149forward

Expression of CNT30614007

Peptides detected in this lncRNA

>peptide 1 (43 aa)
FHHKLDYKTQIPKKVLTKKYGKMGSTNKAQHKKVFNRFRIKAE*

>peptide 2 (58 aa)
MACSIESSIFFLSAAGSFSPIFSSWWDSRELEFTEKVVVLGSGSFSFVHLDQHTRLVV*

Sequence

>CNT30614007
GCTTTCATCATAAACTGGATTATAAAACCCAGATTCCAAAAAAGGTTCTAACAAAAAAGTACGGCAAAATGGGCTCCACTAACAAAGCCCAGCATAAAAA
AGTCTTTAACAGATTCAGAATAAAAGCAGAGTAAAAAAAGATAGAGATACTAAGAGAAGAGGTCAATAATCAACAGATTAGTCGACCTCCTCGATCTTAG
GACCAGGTCCGCCTGAAGAAGGAGGAGCATCATCATCCATACCACCAGCACCTGGACCGGCTTCACCACCAGCTCCTTGGTACATCTTAGCAATGATTGG
GTTGCAAATGCTCTCCAACTCCTTCATCTTGTCTTCAAACTCATCAGCCTCAGCCAACTGGTTACCCTCTAGCCACTGAATGGCTTGCTCAATCGAATCC
TCGATCTTCTTCTTGTCAGCAGCAGGAAGCTTCTCACCAATCTTCTCGAGCTGGTGGGATTCCAGAGAGCTCGAATTTACCGAGAAGGTTGTTGTCCTTG
GTTCTGGCTCTTTCTCCTTCGTACACCTGGATCAACACACCAGGTTGGTTGTCTGAGTAGGTAGAGAAGACTTGCTCCTTCTTGGTCGGGATAGTTGTGT
TCCTT