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Detailed information on CNT30463151


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9AQU5|PIP13_MAIZE, E-value = 8e-48

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691492Saccharum spontaneumOryza sativa41.1527.2781.16207forward
CNT30640424Saccharum spontaneumNymphaea colorata38.5723.3585.05194forward
CNT30316259Saccharum spontaneumCorylus avellana25.0539.580.95126forward
CNT30549105Saccharum spontaneumIpomoea triloba25.0522.1480.95126forward
CNT30631130Saccharum spontaneumVigna unguiculata29.4211.8180.41148forward
CNT30564991Saccharum spontaneumActinidia chinensis45.9257.1883.55231forward
CNT30590722Saccharum spontaneumMusa acuminata28.6332.7385.42144forward
CNT30541063Saccharum spontaneumBrassica napus23.6614.9982.35119forward
CNT30437220Saccharum spontaneumAegilops tauschii45.1339.6991.19227forward
CNT30595794Saccharum spontaneumOryza meridionalis24.8557.0893.6125forward
CNT30706529Saccharum spontaneumPrunus avium24.45885.37123forward
CNT30325169Saccharum spontaneumAsparagus officinalis30.4257.7486.93153forward
CNT3038888Saccharum spontaneumCucumis melo27.2413.2481.75137forward
CNT30603734Saccharum spontaneumOryza punctata34.9913.483.52176forward
CNT3050391Saccharum spontaneumCucumis sativus27.2421.5481.75137forward

Expression of CNT30463151

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MGWRSENLLAPRRTSSSFPSMSPAISSLLAAAEPG*

>peptide 2 (92 aa)
AGAGDGDGGLGDAHDGEDGDVEEEEGGDELGDARAVEGPRLELPGLEERRRRGLLVVLVVGSLRRRADGLALRELVGAQAHVLLLPFHVAGY*

Sequence

>CNT30463151
TGCCGGTGCCGGTGATGGGGATGGTGGACTTGGAGACGCCCATGACGGTGAGGATGGAGATGTAGAGGAAGAGGAAGGTGGCGACGAACTCGGCGATGCC
CGCGCGGTAGAAGGACCACGACTTGAGCTCCCCGGGCTCGAAGAGCGGCGCCGGCGGGGGCTCCTTGTAGTCCTTGTCGTCGGTTCCCTGCGCCGCCGTG
CCGATGGGCTGGCGCTCCGAGAACTTGTTGGCGCCCAGGCGCACGTCCTCCTCCTTCCCTTCCATGTCGCCGGCTATTAGCTCGCTCCTTGCAGCAGCCG
AGCCTGGCTAGCTAGAGCTAGAAGAAGAAGCTAGTTGCTGAGCTGAGCTGAGGTGGTGTGGTGCTTGTGTCGCAGCGGGGAGTGAAGAGTCTTATAGTGA
GCAGCAGCATCAATGGTGGCGAGGAGGTGGTTCTGGAAGGAGTGGGAGCAACGGGTGAGGGGATGAGGTGTGGTGACGAGGACGGCGGTGGGGACGGTGA
CAG