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Detailed information on CNT30708948


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8H1E4|RAP24_ARATH, E-value = 5e-60

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696108Glycine maxOryza sativa21.257.4382.76116forward
CNT30520678Glycine maxSetaria italica20.5119.0282.14112forward
CNT30512612Glycine maxJuglans regia30.48.2981.33166forward
CNT30730067Glycine maxCorchorus capsularis50.3713.678.55275forward
CNT30634641Glycine maxCapsicum annuum33.528.5580.87183forward
CNT30563605Glycine maxActinidia chinensis48.1755.684.03263forward
CNT30552772Glycine maxOryza glaberrima28.9415.9884.81158forward
CNT30453593Glycine maxSaccharum spontaneum21.259.6382.76116forward
CNT30228804Glycine maxAnanas comosus35.3515.0884.97193forward
CNT30364944Glycine maxSorghum bicolor20.159.5785.45110forward
CNT30620999Glycine maxCajanus cajan70.5125.4691.17385forward
CNT30360669Glycine maxLactuca sativa34.2515.2280.21187forward
CNT30371073Glycine maxOryza glumipatula21.2511.8283.62116forward
CNT30100483Glycine maxOryza rufipogon20.159.6288.18110forward
CNT30117556Glycine maxOryza nivara21.256.8183.62116forward
CNT30603672Glycine maxOryza punctata20.157.5887.27110forward

Expression of CNT30708948

Peptides detected in this lncRNA

>peptide 1 (93 aa)
VVLWRRSEFGSRFPRRLLGLPLFLQLSQALANGLKLGVNGGMKRLILPEVTTDGGTLVSEVGEVEPGEVTSELVRGLVVRQSGFLGGVEGSQP*

>peptide 2 (63 aa)
RSLAEKRVWIAFSSEASRSSPVSAAQPGPRKWPEAWRQRRNEEAYTPRSHHRRRNPGVGGWGS*

>peptide 3 (33 aa)
SFSGGEASLDRVFLGGFSVFPCFCSSARPSQMA*

Sequence

>CNT30708948
GTCGTTCTCTGGCGGAGAAGCGAGTTTGGATCGCGTTTTCCTCGGAGGCTTCTCGGTCTTCCCCTGTTTCTGCAGCTCAGCCAGGCCCTCGCAAATGGCC
TGAAGCTTGGCGTCAACGGCGGAATGAAGAGGCTTATACTCCCCGAAGTCACCACCGACGGAGGAACCCTGGTGTCGGAGGTTGGGGAAGTTGAGCCTGG
CGAAGTCACCTCGGAGCTTGTACGCGGCCTTGTCGTACGCCAGAGCGGCTTCCTCGGCGGTGTCGAAGGTTCCCAGCCATAGCCTGGTCCGGTTCTTCGG
GAGTCTAATCTCAGCCACCCACTTCCCCCAGTGCCTCTGTCGAACCCCTCTGTATAGCTTCGTGGGCTTCGGAGGCATGCCCACGTGCTTCATAGGGATG
GGCTTCGGCCCCAGGAAGCTCAGCGTGTTGCTGTGATTCTGGATCTGGATTTGGGCCTGGATCTGAGAGATCTGAGATGGGGTTAGGTGGTTCAAGAACT
TCCATTAGTTCACCCCTGAATGGATCTGAGTGAAGTTGAAACTCTG