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Detailed information on CNT30103362


BLAST search results

BLAST vs Swiss-Prot:
sp|P85955|DRE1_PSEMZ, E-value = 1e-07

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696108Oryza rufipogonOryza sativa64.054697.08718forward
CNT30563605Oryza rufipogonActinidia chinensis13.2931.585.23149forward
CNT30554882Oryza rufipogonOryza glaberrima88.5897.1698.49993forward
CNT30137714Oryza rufipogonLolium perenne31.1319.0782.81349forward
CNT30347505Oryza rufipogonEragrostis tef22.9329.9286.38257forward
CNT30371073Oryza rufipogonOryza glumipatula75.1185.8398.81842forward
CNT30107802Oryza rufipogonOryza longistaminata73.1598.292.44820forward
CNT30496207Oryza rufipogonDigitaria exilis47.3723.8881.73531forward
CNT30604553Oryza rufipogonOryza punctata72.0853.9487.5808forward

Expression of CNT30103362

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MLRRRRRRQRTSWRSWRRRCSGRASGAWRRRRRRCRGS*

>peptide 2 (34 aa)
MFWQSVWSLASTEAALSGKLSRAASPRRRYAAWS*

Sequence

>CNT30103362
CACACAACAATTTTAACAACGACGCTAAATAATAATAATAGTAGTAGTAGAGGTAATTCACATTACAAGTTCTTATAACACGCTAATAATATTACAAGAC
ATAATAATAATAATGCTACTACTACTGTTTACAACCTGTAAGATCAGCAGTAGAAGGTAATAACAGACTTTAGAAGAGCAATGGACGCCACGGCCGGAGT
AACTGACCAGTGACCGGCCACCGGAGACGCACGCCGGACACAAAAACGCCGGCTGCCGGTAGCATCGGCGTCTCCGGTTGAGGAAGAACACCAACCAACC
CTAGCATCTACAGAGGAAACAAGTCCGGAGAGAGATCGATCTACGTACACAAACGAACCAAACCAAAAGGATTAGGGACTATAAAACTGCTAATCCATGC
CCGTCCGTGCGGTGCAGAATGTCTAAAATCCCATCTGCACGGCGGCGGCGGCGGCGACGATTAGGCTAACGACGGCGTGAGTACTAGCCAAGAAGTGGTG
GTGGTGTTAATTGGCGGCGAGGAGGGAGTCCCAGTCGATCTCGTAGGACGGGTACTTGGTGAGGGCGAAGGCGGCGGCCTCGTCCCACGGCGCCTCGCTG
AAGTCGAGCTGCTGCATCTCCGGCACGGTCGCCGGCGTCTCGGCCGTGGTGGCGGCGGAGGACGGCGACAGGGAGGGCGACGAGTCGGCGGACTCCAGGC
AGGACGACGCGTCGTCGGAGGACGGCGACGAGCAGTTGCTGGTGGGCGCGGAGGATGTTGCGGCGGCGGAGGCGGAGACAGAGGACTTCTTGGCGTTCTT
GGCGGCGGCGATGTTCTGGCAGAGCGTCTGGAGCTTGGCGTCGACGGAGGCGGCGTTGTCGGGGAAGTTGAGCCGCGCCGCGTCGCCGCGGAGGCGGTAC
GCCGCCTGGTCGTAGGCAAGCGCCGCCTCCTCGGCTGTGTCGAAGGTGCCGAGCCAGAGCCGCGTGCGGTTCCGCGGGAGGCGGATCTCCGCCACCCACT
TCCCCCAGTGCCGCTGCCGCACGCCGCGGTACAGCTTCTGCGGCCGCGGCGGCGTCGCCGCCGCCCCCGCCGCCGAAGCCGACGACGACGACGCCTTCAT
CGGCTGGGCGCGCGGGGCGAG