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Detailed information on CNT30117581


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30554862Oryza nivaraOryza glaberrima47.2382.1399.33749forward
CNT30440289Oryza nivaraAegilops tauschii12.0437.8286.91191forward
CNT30347505Oryza nivaraEragrostis tef16.229.9285.99257forward
CNT30368632Oryza nivaraSorghum bicolor5.4924.2386.2187forward
CNT30371073Oryza nivaraOryza glumipatula52.7185.2298.92836forward
CNT30107802Oryza nivaraOryza longistaminata52.5999.8892.09834forward
CNT30103455Oryza nivaraOryza rufipogon53.480.7499.41847forward
CNT30580794Oryza nivaraEchinochloa crusgalli23.0121.7384.11365forward
CNT30496207Oryza nivaraDigitaria exilis22.9516.3782.14364forward
CNT30604553Oryza nivaraOryza punctata49.8752.886.85791forward

Expression of CNT30117581

Peptides detected in this lncRNA

>peptide 1 (94 aa)
MLRRRRRRQRTSWRSWRRRCSGRASGAWRRRRRGAGLDVVHLGRAELWLLGQPATVRERVREGEWRGGTKLGTNRRRAGGISDKRLECSHQLLP*

Sequence

>CNT30117581
CGACGCTAAATAATAATAGTAGTAGTAGTAGAGGTAATTCACATTACAAGTTCTTATAACACGCTAATAATATTACAAGACATAATAATAATAATAATGC
TACTACTACTGTTTACAACCTGTAAGATCAGCAGTAGAAGGTAATAACAGACTTTAGAAGAGCAATGGACGCCACGGCCGGAGTAACTGACCAGTGACCG
GCCACCGGAGACGCACGCCGGACACAAAAACGCCGGCTGCCGGTAGCATCGGCGTCTCCGGTTGAGGAAGAACACCAACCAACCCTAGCATCTACAGAGG
AAACAAGTCCGGAGAGAGATCGATCTACGTACACAAACGAACCAAACCAAAAGGATTAGGGACTATAAAACTGCTAATCCATGCCCGTCCGTGCGGTGCA
GAATGTCTAAAATCCCATCTGCACGGCGGCGGCGGCGGCGACGATTAGGCTAACGACGGCGTGAGTACTAGCCAAGAAGTGGTGGTGGTGTTAATTGGCG
GCGAGGAGGGAGTCCCAGTCGATCTCGTAGGACGGGTACTTGGTGAGGGCGAAGGCGGCGGCCTCGTCCCACGGCGCCTCGCTGAAGTCGAGCTGCTGCA
TCTCCGGCACGGTCGCCGGCGTCTCCGCCGTGGTGGCGGCGGAGGACGGCGACAGGGAGGGCGACGAGTCGGCGGACTCCAGGCAGGACGACGCGTCGTC
GGAGGACGGCGACGAGCAGTTGCTGGTGGGCGCGGAGGATGTTGCGGCGGCGGAGGCGGAGACAGAGGACTTCTTGGCGTTCTTGGCGGCGGCGATGTTC
TGGCAGAGCGTCTGGAGCTTGGCGTCGACGGAGGCGTGGAGCGGGCCTGGATGTAGTGCATCTGGGCCGGGCTGAGCTCTGGCTGCTGGGCCAGCCCGCC
ACCGTACGCGAACGCGTGCGGGAAGGAGAATGGCGAGGTGGGACTAAACTGGGAACAAACCGGAGGCGAGCCGGAGGCATCTCGGATAAAAGGCTCGAGT
GCTCTCATCAGCTCCTCCCCTGACAGATCTATAGCTGCAGCCATCTACTCACTCTTTTTTTTGGGATTTTTTTTTCTGATACTAAAACAGTAGTAACAAA
GATTTGCCTGGTTCCGAATCCAAAATCAAGAACAGGCAGGAAAGAGGGAGAAATCGACAGCCACAGTAAAAAAACAGATGGCTTTTTGGTGGTAGATCTA
GCAAGTGAGGTGTGGAAAAAGAACCCCTCTTGGCTACCAACCTAACACTAGAACACAAAGAAGATGAAAGAAAAACAGCAGATCTGGGAGCCCTGGATCT
AAAAGGCCCTGGGTCTCTCGCTCTCTGCAAGCAACCTAACCAAGAAACCGTAGAAGAACAGGTGGGGGAGCCAGAGGAGGAAGAAGAAGAAGAGGGTTTC
GAGAAAACTTTACCTTGAAGACGCTCGAAGTCGCTCAGATCTAAAGCTTTTCTTACCTCGCTCGAGCTCACGGTGGCTGTGGGTGTTCGTGGGCTTGGAG
ATGGTGGCGGCGGCGGTGGGAGGATGGCTGTGGATCTGGGTGTGTGTGTGGGCGAAAGTGGGAATGGTGGGCGGGGAGGTGTGAGG